Gene detail

Detailed information of FUN_036119-T2 in Acropora pulchra

Genomic Location: ptg000025l:15563921...15588345
NR annotation: XP_029188254.2, E3 ubiquitin-protein ligase TRAF7-like isoform X2 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_036119-T2

GAGATATGTCACCCACAAAATTCGTCGTTACTCCGTCCGAATCTCTGAAATGCCCCATTTGTAAGGAGATTTTCAATGATCCAGTGATTTCCACTCAGTGTGGGCATACATTCTGCAGAAATTGTATTCGGAATGGTGCCTCGATCACTGGGAATTCAACGAGCAAATGTCCTCTTGACGGAACGACTCTCCTACGTCTTCACTTGGTATCGAACTTAGCCGTTAAAGGACAGATTGAAGATTTGCTGATTTATTGCAGACATGGGCTAGCTCGATCAAGTTCAGATGAAGACTTTGAAATAGACAGCGCTGGCTGTCAGGAAAAGATCTTGTTTGGCCAGCGGGCTGATCATGAAGAAACGTGCGAGTTCGCCATAGTTCCTTGTCCTAATAGTTCGAATCAATGTGGAAAATTTCAACGACGAACCTTAGAAGACCACCTTAAAATCTGCACTCAGTACAGATGTCAGTACAGCGTCAAGGGTTGTGAATATGTTGGAACAAAGCAGGCTGTAGAAGAACATGAGCAAAATTTTAACCACAAAAGCAGCACACATGGACCTATGCTTCAAGGTCTTCATTCTAAGTCCTCTGAAGAGTTGAGATCTTCAGTACAAGTTCTTTCTGAGAGGGTTTCCTGGTTAGAAAATAATCAAGATGCTTTGATGACAGAAGTTGAACAGTGTAACAGTACAGTTTCAAGATTAGTAGAAACAGTGGAAGATTTGTCATTTCAAGTTGAACAGCTGACGGTGCTTCTGAAACGATCTTCACTTTATCGTGAAATGTCTGTGACCTCCATTCCAGAAATATTGAACAGTAGCCAAAGTCCGAGCCCTGATGAAAGTGGTGTAAGCTACTCTTATGGACCTAAATCCCTGGTCAGACTTAAGCCCGCTGCAGTGGTGTCAACACACCAGGATGCCTGGAGTATACCATGTGTCTTCAAATGTATTGGAACTCTTAGAGGTCACCGTGGGGCCATCTGGTCCCTGGTTTCAAGGGGCCATCGCCTATTCAGTGCAGGAGGAGACCGAGTCATCAAAGTCTGGAACATGGAAAATGTGCGGCAGGCAAAATGCACTGAGGTCCTTGAAGGACACACTGGAGATATTCATACCATGTGTGTTGGAGGTGGAAAGCTGTACAGTGCTGGATCAGACCAGGCCATTATATCATGGAACTTAGAAAATTTAACTCTTCATAGAAGAGTCGAGAATGCCCACAACAACGTCATTTGTGCCATCATTTACAATGGAAAGTATCTCTTTACTTCATCCCACTCTTGCATCAAGGTGTGGGATGCATCCAATCTTCAAGAGGTACATGAGATGCCAGATCTCCATCACTGGGTCAGAGCATTGGCTTTGGATGTGAGGAGAGAAAAACTGTTTAGTGGTTCACACAATGTTGTTCACATATGGGACGCTATTGGCTCGTTTTGTCTCCGTGGGACGATTGACCATTCCTTGGGTTCTGTGTACTCGTTGGCGACCACCAGACACTTTATTATTGTGGATCGAATTTTCCTGGAATGAGACTCCCGAGGGAATGCCATGACCAATCACAAGAAATCAATTGACGTCACTGCGTCGCAAGACCGGAAATGCCTTTCTTTCACAGAGGAAAAGGTACACTAAAAATAGATCAGTCTGTAAAAAAGCCGTGACATAGGCTTAGTATGGGAGTTGCATGCTCCTACTCATCGGCTCCTGTGAGAGTTTGCTTTTTCTTCGCCGTGGTCATTCTCAAAACCTTTGTACGAGATCGATATGACATGTCGGCTGTGTATTGCTTTATCCTTTTGATGTAAACGATTTTATTTCCACCTTCTTTGCCTCACACAGGGACGTATAATCAAAACATTCACTTGTATGACGTAAATACGTACCAGTCCATCAAGGCTCTTGTGGGTCACATAGGAACAGTAACGGCCCTGGCACCAGCTGTCACAGGAAAACTGCTCTTCTCGGCCTCCTATGATACAACAGTGCAGGTACAATCACTTGATGGTTGCATACGATAAAAAGGATGCTGTGCTAAAGCATTCATGATTGCCTGTTTCTTTTCCGCAGCCGTCTTTAGGGTTGTCTAGCAACGCTACCCACCCTGAGGGCGCATTGCGTGACAGCCCCAAAAGACGACTGTGAAGCGGAGTATGGTTCCCAATGGTGTAGACTGTGTTTTTGTTCTTCGCGTGATTTTTCAATATTGTTGGGAAGGAAAGATTGTGGCAATAGTAAGAAAAGTATGTCTTTAAAGTGTGGGTAGAAGAGATTCGAGATTTAAAAACGTTATTTGGTATACAAATCTGTTTCAAATATTTTTTGGAGATAGAGAAATATAGTGCGTTCTGGTTGAGCCCGCAGACGCATTGCAATTTCTCGTGTAATTTTAATGCAATTCGTTCTTGTTGTTGTAGAAATAAGGAAGGATAATTTTGTCTCGCAACGCATGTGTAGTCAAGTGTAGTTTAATGAAACCCTGCGACGTGTGTCACAATAGCTGTGATGATTTTTATTCAGGTTTGGAATCTTGACACCATGTTACCAATGCAGACCCTTTCGCGACACGAAGGAAGTGTTAACTGTGTTGTGATCCATAAAGATATGCTACTCTCAGGCTCAGAAGATATGGAGATAAAGGTTGGTTTAATATTTTCAATCTTCACTAAAGTCGTTGTGTCAAATTAGCTGCATAGGAGTTATCGCAACTGGATGGATAGAGACTTTTTTTTTGTAGTATAAGACTGAGGTTAATCTATCAAAGTCACGCAAGTACCTTTACATTGGCTATCTGCGCTTTTGAAACCAAACCGCATATTTGAAACTTTTGCCAAAGAAATATGTGCATAAGCGCTCTGTTTCTTTTTTCTTCCTTTTTTTTCTGTTCAAAGGCTAGCTAGACGAAGCAAAGGCGCTGAATTTTGGTAGATCAAACCAGCAAATTCATGGAGTGTACTATAACAAAATATTGAAGCTCACTAAACGGCTATGAGGGCTATCTGTTGTGTCAATACTTTGTTTTTTCTTTCTTTCTGTATTTTTGGTTTCTTTAGGTCTTCAAGTATTTCAAAGCAGAGTGAGGCCAGCCAGTTTTTTGCTTCTGCTGTGCCGTGGTGCTGTAACATTTTGCTCCTTGACTGGCCTGTAAATAGAATTCGAAAAGATTGGAAACGCGCGAAATTCGGAGCTGTCCCTCGAAATCCTTGTGCGCGCTTGCGTGATTTCGCAACATACCGAAATCAGAAACTACTCGCATTCCATTTATATGTGCGATGCTTGTGAGCGCGACCCTGTCTGATAAACTTTTTATATTTAAGTAATGACGGGTTCCTCCTCAAATGACCCAATATTTACTTAGCTTGTGCAATTCAAGAAATTATTTTCTTATACATTGAGTTCTGTCTTGCGGATACGAACCAAAGGGCCATTCCTTTGAATTGTGCAATCCAGACAACTATTTTTTTGCTTTTCGCAAAGTGCTAGGAACATTTATGAGATCGTATAATTTATTGCATTGCTGACAAAGTGTAGGTTTTCATGACCAAACAATGTAAATAGCTCATAAATCATAACAGACGTAAACAGTGGAATGAACCGACAATAATGCCGGGAAAATATGTGCAGCTGGTGCTAAGATTAGCATTATTTCACATTTAGTTCACGAATTGAATTAGGTCTGAAAGAATGTGTGATTATTTGAAGTTGATCTGTATTGTAAGAGTAGGCGTAGTAGTTTATATTTTTTAAACACGAGTTGGAGAACTGGAAGGAAAAAGCATTTGCTGACCGAGTTAAGTAATTGATCTGTTCGGACCTTGAATCACATAGAGCCCCCTCTAAGACACACATTCAAAATTTTGGAGATTGAAAAGAACGACTTCTAAGTCGACTTAAATAACTCTTTCGAGACGACTTGTAAGTGGATCATTAAGGTATAATTTGGACGGAAGACTAAATCGAGAATCTACTTGCTTTCAAAATGGAGGACAGAAAATTATTTCAGGCTTTCTAATGTTGCATAACAGCAAACCATGTTCCATGCAATTGAGGCGAATACTTGCGAGGAAACTTATAACAACTTGAGAGAGGAACTTGCATCTGATATTTCAACAGTTATACGTCACACAGTAAGTTACTCCTTAAAATTCTGCAGCATTAATTAAAGAATGACAGAGATGCCAACCTCTGGAGATCTAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6Q0C0	E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens OX=9606 GN=TRAF7 PE=1 SV=1
Q922B6	E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus OX=10090 GN=Traf7 PE=1 SV=1
P70191	TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005104 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF02176 all species →	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003613 all species →	Domain	U-box domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19849 all species →	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010992 all species →	Biological Process	ubiquitin recycling	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10646	TRAF7, RFWD1; E3 ubiquitin-protein ligase TRAF7	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.