Detailed information of FUN_036238-T2 in Siderastrea siderea

Genomic Location: contig_41:1357470...1397178
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19303
all species →		Anticodon_3Anticodon binding domain of methionyl tRNA ligaseDomainInterproscan
PF18485
all species →		GST_N_5Glutathione S-transferase, N-terminal domainDomainInterproscan
PF00043
all species →		GST_CGlutathione S-transferase, C-terminal domainDomainInterproscan
PF09334
all species →		tRNA-synt_1gtRNA synthetases class I (M)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023458
all species →		FamilyMethionine-tRNA ligase, type 1Interproscan
IPR041872
all species →		DomainMethionyl-tRNA synthetase, anticodon-binding domainInterproscan
IPR010987
all species →		DomainGlutathione S-transferase, C-terminal-likeInterproscan
IPR029038
all species →		Homologous_superfamilyMethionyl-tRNA synthetase, Zn-domainInterproscan
IPR033911
all species →		DomainMethioninyl-tRNA synthetase core domainInterproscan
IPR001412
all species →		Conserved_siteAminoacyl-tRNA synthetase, class I, conserved siteInterproscan
IPR041598
all species →		DomainMethionine--tRNA ligase, N-terminalInterproscan
IPR036249
all species →		Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR004046
all species →		DomainGlutathione S-transferase, C-terminalInterproscan
IPR036282
all species →		Homologous_superfamilyGlutathione S-transferase, C-terminal domain superfamilyInterproscan
IPR004045
all species →		DomainGlutathione S-transferase, N-terminalInterproscan
IPR015413
all species →		DomainMethionyl/Leucyl tRNA synthetaseInterproscan
IPR009080
all species →		Homologous_superfamilyAminoacyl-tRNA synthetase, class Ia, anticodon-bindingInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR014758
all species →		FamilyMethionyl-tRNA synthetaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45765
all species →		METHIONINE--TRNA LIGASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004825
all species →		Molecular Functionmethionine-tRNA ligase activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006431
all species →		Biological Processmethionyl-tRNA aminoacylationInterproscan
GO:0017101
all species →		Cellular Componentaminoacyl-tRNA synthetase multienzyme complexInterproscan
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01874MARS, metG; methionyl-tRNA synthetaseEC:6.1.1.10
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_036238-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP