Gene detail

Detailed information of FUN_036255-T1 in Acropora pulchra

Genomic Location: ptg000025l:17193851...17211304
NR annotation: XP_029182822.2, lysophosphatidylcholine acyltransferase 2-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_036255-T1

CATTCGCTTCTTGACAGTGCCGGGTTTCCCTCGAGAGAGGAAATCTGGCTTTGGGATATTTTGAATTCGCGTTTTTTGTCAGTTCGTCATGCTCTCAGTAGTGGAAGATGAAGTTGAACGTTTTTATTCAGAGCTAAATATAATCGAGCCCGTAGTTTGGAACCCTTTTAAAAACTGCGTTCGAATCAGTTGGCGAAAGAAATTGGAGATTTTTTTAGGGTTAATTTTTCTCCTACCCGTTCGTCTGGTTGTTGGTATTTTTCTGTTTGCCTTTACTGGCCTTCTTTGCCTTGTCATTACTGCGGGATGGAATCCACCTGATCAACTAAGGACACCACTGACACCATGGAGAAGGAAAGTGAAAGATGTCCTCCCTCTCTTGGTCCGTTCTCTGCTGTTTGCTTTGGGGTTTCATTCAATCAAGATAAAAGGCAAACTGGCATCACCATCAGAGGCCTTTATAACCGTAATAGCTCCCCATTCATCATTTCTGGATATTTTGCTGCTTTGCGAATATGGTTATGCTCCATCTGGTATTTCAAGAATGGAAAATGTTACAAGCCCTATTTTCGGACCATTTTTTCAGTCTCTTGAAGTCATTGGTGTTTCTAGAGATGATACAAAATCAAGACAAAATGCAGTAAAGGAACTGCAGTACAGAGTAATTACAACAAGAGGACAGTGGCCCCACATCTGCATTTTCCCTGAAGGAACTTGTACTAATGGCAAATGTTTGATAAGTTTTAAACCTGGGGCGTTTATACCAGGATGCCCTGTCCAACCAGTTCTTCTACGTTTTCTAAATGACTCAGAAACATATTCTTGGACTTGGGATGGCCCTGGGTTATCATTATTAGCTGTTTTACTTTTGTGTCAGCTGAGTAATGATGCTGAAATTGAGTTCCTGCCAGTTTGGAATCCCTCTGAAGAGGAAAGAGAAGATCCAAAGCTCTATGCAGAAAATGTTAGGCAGCACATGGCAAGGTGTCTGAATCTTCCAGTGACTGGTCATTCATTTGAAGATGCTGTGCTAATGAGTAAGGCTGTTGAGCTTGGCCTTCCGCCATCAACAGGAGTTATTGAATTTTGTAACACTGCTGGCAAACTAGGAATTAATGTAGATTGTGCCAAGGAGCATCTCGAAAGATTTGCGCTCATGGATTCAGACCAAGATGGCGAAATTTCATTCGAGGACTTTGCACTGCATTACAATTTACCCATCTCGACACCTGTAGAAGAGATCTTCAAGATTATGGACAGGGATGACGAGGGCATCATTGGCTTTCGACAATATCTCGTGGGTGCAGCTTGTTTGGCCCGAATAGCGGCAAAGAAAGAAGTGGCTGAAAGTGCGTTGAAGGTTTTGCAGGAGTACAGCAAACCGAAGAGAAGCATTGTCGTCGACAGTAATTTTAAAGACATCGTAGACAGTATCCTAGAAACTATAGATGATGAAGACTACAATAATCACAACGTGAGGAGCAGAAATGAGGAGTTTCGAGAATTCTTATCCCGTCACCATGATCTGACAACTTTGCTATCAAGTTTACTGCCTCGTGAAACACCTATTGAAAATCTTGTCAGAGAGTCGAGACTTATCTAAGTTTAAAAGAGTGGAAAGTGTAACTAATAGAGTGATTTGAAATTGAGTGTTGTAGAAGTGAAAAGTAGCAACCTTCAGCTTAAAAATCCCTAAATAACAATGGGCAGAACCAGTGTTTTTTGAGCGTGCCAGAATGAGCAACCGCAGCAAACCATTGTTTTAACGAAAACCGCTGATCAGCGACGTGGTTCAGGTCATTGTTATTTCAGGTCATCCCTACAGCGTGTCTTTGTTGGTGACAAGGAGTTAAAATTTGACCAATTGGAATCCCCATTGACGCTCACTGAAAAACTGCTCGATATTTTGCTGCGTGTTGCTAAACAGTAGTTTGCCAGTTCTTAGCATCTATCAATTTATATACTTAGGTGGAAAGGATATGACGAAATTAACATTGCTAACAGACGGAGTAGAAGTCTTTTTGTATAAAATTTTGGTGTTCTCTTGCAATATGCTCGAGGGACTTGCGTGAATGATCATTTTTCAAATTGGTGAACACACCAAACTTTTCTACGAGTACATTTGGTTGATGTACTATTATTTAAAGAATTAGGACCTTACGAATTAGAGCGGTTTTCAAATGACTGTCGAAAAACCAAAACCAAAGCAATTACTCCGGCCAATCACATCAGGAACAAACAGCTCCATGAGCCAATCACAATTCCTCGCAATTACCTGTAACTCGCTCGAAGCGCGGGAAAAATCGCGCGTACATGGTGCGATTGGTTTTGGTTTTGCGTCTCATTGGTTGGAAAACTGGCGCGAGTCTTTTAAGCCAATCACTAAGCGTAGCAAACGCAATCACGTAATTACTTTCGACAGTCATTTGAAAACTGCCCTAATCAAATTGGCGATGTGAGGTTTGTTGAATTTTTGGAATTTCACTGTTTTTGTAAAATTGCATTGATATAGATAGGCATTGAAGGCTGACGTAGAGTAATAGATAATATTTATAATGAGGAAGAATATGTGATGAATTATTAATTCCTAGAAGGCTAATTTATTGAATATGTAATTGAATTTCTGAGACTTCTTTGTGTGGATCGCAATGGTGCATGTGATTTTTAGGACGCTGCAAACCCGTTCAAAATTCTTGGAGCTTACTAAAATGACATTATTCCTTCCCCCTCCCCCTTCCGATTATGTGTTGACCTGAAGTCTATTATGACATGAACATGAACAGCAACAACATAATTTGGGGGAGATGGGGTCATTCATAAACATATTTGGAAAATGAATAAGGAGTTGGAAAAATGCTACCACTTACTATGTTTCTCAAAAAGTCTTTCCCTAGCTGTCGTCTTAGTGCTCAATTTTACAGCTGGATAGCTGCGACCGGCCATTGTCTACTATTTTAGTTTCAGTTCAGTTGTTGCTGTGATGTAAATTACCAGGAGTGACTGATTATGGTGTGGTCAGGATTTTATATAGTTTCTGCTTTTTATTAGAGAGAATATTTATTATTTAATGGGGTCGACGTTTTCGTATTTGTGCGCAATGCTTTGTTAGCGGGTATGTTAATTTTAAATACATTAGTTGCTTCGAAAATTAAATATTTCCATAGGGGAGAGATTCATTAAAAACTGATTTCTATGGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BYI6	Lysophosphatidylcholine acyltransferase 2 OS=Mus musculus OX=10090 GN=Lpcat2 PE=1 SV=1
Q7L5N7	Lysophosphatidylcholine acyltransferase 2 OS=Homo sapiens OX=9606 GN=LPCAT2 PE=1 SV=1
P0C1Q3	Lysophosphatidylcholine acyltransferase 2 OS=Rattus norvegicus OX=10116 GN=Lpcat2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002298 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01553 all species →	Acyltransferase	Acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045252 all species →	Domain	Lysophosphatidylcholine acyltransferase LPCAT1-like	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002123 all species →	Domain	Phospholipid/glycerol acyltransferase	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23063 all species →	PHOSPHOLIPID ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0042171 all species →	Molecular Function	lysophosphatidic acid acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13510	LPCAT1_2; lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase	EC:2.3.1.23 EC:2.3.1.67	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.