Detailed information of FUN_036605-T1 in Siderastrea siderea

Genomic Location: contig_41:7053267...7068918
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_036605-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR013088
all species →		Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan
IPR000679
all species →		DomainZinc finger, GATA-typeInterproscan
IPR039050
all species →		FamilyGATA zinc finger domain-containing protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13340
all species →		GATA ZINC FINGER DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0043565
all species →		Molecular Functionsequence-specific DNA bindingInterproscan
GO:0006325
all species →		Biological Processchromatin organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23407GATAD1; GATA zinc finger domain-containing protein 1-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_036605-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
38TPM > 0
7Conditions
1,461.1Max TPM
173.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 4 75.47 590.48
holobiont · low.pH Control.temp 20 10 266.77 1,315.15
holobiont · control.pH_high.temp 20 6 99.08 852.47
holobiont · control.pH Control.temp 19 12 302.65 1,461.11
Whole organism 4 4 33.49 38.31
unannotated 1 1 22.67 22.67
live coral tissue/skeleton 1 1 38.89 38.89

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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