Detailed information of FUN_036693-T1 in Siderastrea siderea

Genomic Location: contig_42:1155482...1160367
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00173
all species →		Cyt-b5Cytochrome b5-like Heme/Steroid binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001199
all species →		DomainCytochrome b5-like heme/steroid binding domainInterproscan
IPR036400
all species →		Homologous_superfamilyCytochrome b5-like heme/steroid binding domain superfamilyInterproscan
IPR050668
all species →		FamilyCytochrome b5Interproscan
IPR018506
all species →		Binding_siteCytochrome b5, heme-binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19359
all species →		CYTOCHROME B5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0020037
all species →		Molecular Functionheme bindingInterproscan
GO:0043231
all species →		Cellular Componentintracellular membrane-bounded organelleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_036693-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_036693-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
6.4Max TPM
0.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 4.91 6.44
unannotated 1 1 2.71 2.71
live coral tissue/skeleton 1 1 4.08 4.08

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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