Detailed information of FUN_036730-T1 in Siderastrea siderea

Genomic Location: contig_42:1756840...1764777
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_036730-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR052266
all species →		FamilyMitochondrial Rho GTPase/EF-hand domain-containing proteinInterproscan
IPR002048
all species →		DomainEF-hand domainInterproscan
IPR011992
all species →		Homologous_superfamilyEF-hand domain pairInterproscan
IPR018247
all species →		Binding_siteEF-Hand 1, calcium-binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46819
all species →		EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0060170
all species →		Cellular Componentciliary membraneInterproscan
GO:0098797
all species →		Cellular Componentplasma membrane protein complexInterproscan
GO:1903569
all species →		Biological Processpositive regulation of protein localization to ciliary membraneInterproscan
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_036730-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_036730-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
34TPM > 0
7Conditions
344.8Max TPM
48.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 6 34.45 294.69
holobiont · low.pH Control.temp 20 4 20.03 166.34
holobiont · control.pH_high.temp 20 8 47.74 202.91
holobiont · control.pH Control.temp 19 10 102.73 344.84
Whole organism 4 4 16.40 22.90
unannotated 1 1 8.57 8.57
live coral tissue/skeleton 1 1 9.32 9.32

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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