Gene detail

Detailed information of FUN_036747-T1 in Siderastrea siderea

Genomic Location: contig_42:2049791...2117938
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_036747-T1

GCGATAGTGCAGTGAGTGAATCTGTGGATCGGTGGATCAACGCCATTATCCAGAGGCATGGCTTTGTCCAAACACTCCTCTGATATCGAGAACCTCCTTGCACTGAATCCCAAGATAAAACCACACGCAAGCTTGGTTTCAACATCAACTACAAAATCAAACAGAAAACACTGGAAGAGGAATCAACAAAAGGGCTGTTCTAGTTGTGAAAGTCTTACAAATAACTTTGAAGACGTCAAGCACACAACACTGAGTGAAAGAGCAGCTCTTAGGGAGGCTGCAAGGTGCCTTAAGTGTGCTGATGCACCCTGCCAGAAGAGCTGTCCAACACAGTTGGACATCAAGTCATTCATTACCAGTATCGCAAACAAGAACTATTATGGAGCTGCCAAAGCGATCTTCAGTGATAATCCTGTTGGCTTGACCTGTGGTATGGTGTGTCCCACCAGTGACCTTTGTGTTGGTGGCTGTAATCTGTATGCCTCAGAAGAGGGACCTATTAACATTGGTGGCCTACAGCAGTTTGCTACAGAGATTTTCAAGAGTATGAGGATTGGACAAATCCGTGACCCCTCACTTCGACCTGCTGATCAACTTCCAGAGAGCTACCACATTAAGGTGGCGCTCATTGGGTGTGGTCCAGCTTCTATCAGTTGTGCAACTTTTTTGGCTCGCCTGGGTTACACCAACTTGACAAtatttgaaaaggaaaattaCATTGGTGGCTTAAGCTCCTCTGAGATCCCACAGTATAGACTGCCGTATGATGCTGTCAATTTTGAAGTGGAGTTAATGAAGGACCTTGGAGTCAAGATTGAACTTGGTAAAGGTTTAGGCATGGATGGGCTGTCAGTTAAGTCCCTCAGAGAAAAAGGATATGAAAGCATTTTTATTGGGATTGGTCTTCCACAGCCCAAGCTGTCTCCAGTATTTGATGGGCTGAATGTTGATAGTGGGTTCTACACTTCAAAAGACTTTCTGCCAGTAGTATCCATGGGCAGCAAAGCAGGCATGTGTTCCTGCAAGTCTAAGTTACCAGAGCTGTTTGGAAATGTCATTGTGCTTGGATGTGGAGACACAGCCTTTGATTGTTGTACATCAGCACTCCGCTGTGGAGCTCGTAAAGTGTTTGTCATCTTTAGGAAAGGATTCACCAACATTAGAGCAGTTCCAGAAGAGGTTTGTTTACTTGTCCTGCATTTTTACTATAATgggagaaattaaaaaaagacctGGCATAAAAGAATTAAATATTCATCCACATGCGCATATAGATTCAAAAAGTTACTACCATGTAATTATCACATTGTAATTAGTCTTAAGGTTTGACTTTGAAAGGAGGAAAAGGCTGCACAAAAGATCAATAATAATTACAAGTTATTCTGGGGCACTCTTTGGATATGAGGTTGGAAGAGCAAAAAGGTGCATAGCTCCAAGTCCCTTGTGAAAATCAGCCTGGAATTCCAGTGGAATTCTGCCTAAAATTCAGGCTAGAATTGGATTCCAGGCAGATTCCAGGTGAAATTTTATTGCTCActtttttggttgttgttgcatgAAAACCTTAACAGTTAGGGTGTACCTGGGGATGGGTAAATTTTATCCTGGGTGGGTTCAAGGTGTATGGACCTCGTAGGGTAGTTCATGTCCTTTTGTCCTACACCCAGCACTTGCGCTAAatcagaaaataaataaataaattccctgCAATCCGGCAGAAAATTTGCAATATTCTGCTGGTGTTCCAGATTATTCCAGCGGAATTTCACCCTGAATTCCACCAGTATAAATGATATCCGTCAGAAACATTGCCAGCATTCTGCTCGTATTCCAGACTCCAAGTGGAGTCCATTGGAAAAATTGCCGGCATTCTGCCAGTATTCCAGTCTGAGTCCCAGGTATAACAAGTATTCCAGTGTAGATTCCAGGTGAAATGCACTGGAATCACCTGCCCCATTCTATCCTATTCCAGTAGTAGCCGAGTCCATATTCCATGGGGAATCAATCAGAGTCACATGTATTCCTTACATTAAAGTCAAAAACGTTGTTTGCTGGTATTCTGTGTTTAGTGAACCAATGAAAAAGCTAGAACTTCAATAACTGAGATCAAGAAtttcataattatttttaattaatggtttttgacctatgttgaaaacatagggtcttagccagactgcagtttgtcgctttctgtgtttgtttatttgtttgtatgtatgtgtgtatttttgatccgggggggagTCCCACGTGAGACGGGGGgaaatgctcgtcggaaaattcgAATTAAAGCTATTCTGAAAGAGACGgtgaacgcgagacgacgagcatccatgcacctttcacatgggagtacacccccggggaatttatgtggcactatgtggcaccaatcagattgaggctactaggCTAAGaatacattctaccaatgaaagagctggttagaatccgcttactgaagctgaagttCAGACAGGTTAAGCTTAtcggccatgttgaatgtacatatggggatggaaacgatcagcgcaaatgtgcttttctactttttcctctcgaatattatattttcagtaaaggcttggtgtgatGGAATTGATGGctaagctattgtaag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF14691 all species →	Fer4_20	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009051 all species →	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR028261 all species →	Domain	Dihydroprymidine dehydrogenase domain II	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43073 all species →	DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)]	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002058 all species →	Molecular Function	uracil binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006210 all species →	Biological Process	thymine catabolic process	Interproscan
GO:0006212 all species →	Biological Process	uracil catabolic process	Interproscan
GO:0017113 all species →	Molecular Function	dihydropyrimidine dehydrogenase (NADP+) activity	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00266	gltD; glutamate synthase (NADPH) small chain	EC:1.4.1.13	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.