Gene detail

Detailed information of FUN_036749-T2 in Acropora pulchra

Genomic Location: ptg000026l:1344480...1421733
NR annotation: XP_029212398.2, flap endonuclease 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_036749-T2

AGCCAATGAGTGAAGCCTATCAAACCGACCAGTTTTTGGCGGGCCAAGTGGAAGTTGTGCGAATTCAACAAACTAAAATGGGGATTCACGGACTAGCAAAGGTTATCGGCGATCACGCTCCATCCGGGATGAAGGAGAACGAGATAAAGAACTATTTTGGGAGAAAGATTGCAATTGATGCTTCCATGAGTATTTACCAGTTTCTGATAGCAGTGAGGTCAGATGGAAGCCAGCTTACCAATGAGGCAGGCGAGATTACAAGCCATCTCATGGGAATGTTCTACAGAACAATCAGGATGGTGGAGAATGGAATCAAACCTGTGTTTGTTTTTGATGGCAAGCCACCTCATATGAAATCTGGAGAGCTGGCAAAGAGAAAGGAGAGACGTGAAGAAGCACAGAGGGGATTGACTGAAGCAGAGGAAGCTGGTGATGCAGAAAGCATGGAGAAGTTTTCTCGAAGGCTTGTGAAAGTTACACAAGAGCACAATGCTGAGTGCAAGACATTGCTTAAACTTATGGGAATTCCGTACCTAGATGCTCCATGTGAAGCAGAAGCTCAGTGCGCTGCTTTGGTTAAAGCAGGCAAGGTGTATGCCTCAGGAACAGAAGATATGGATGCTCTAACATTTGGTTCATCGGTGCTTCTACGGCATTTGACTTTTAGTGAAGCAAGGAAATCTCCAATACAGGAATTTTATCTAGACAAAATTTTAATGGAACTCAAACTTTCACAAGAGGAGTTCATTGATTTGTGCATTTTATTAGGCTGTGACTACTGCGATTCTATCAAAGGTATTGGACCAAAAAGAGCCATGGAATTAATAAGGCAGTACAAGTCGATCGAAGAAATAATCAAGCACATTGATACAAAGAAATATACATTACCTGAAGAATGGCCTTATCAGGAAGCAAGAGAATTGTTTAAAAACCCAGAAGTTCTCAACGTTGAAGAAGTGGAGTTGAAGTGGGAAACGCCAAATGAAGAAGAACTAGTGAAATTTTTGGTTCAGGAGAAAGGTTTCAGTGAAGAGAGGATACGTTCGGGAATAAAGAAGCTGCAGAAGGCTCGTCAAAGCTCCACTCAGGGAAGACTAGATTCCTTCTTCAAAGTACTTCCCATTACACCATCACCAGCGAACAAGAGAAAGAGCGAAGACACTAAAGGTTCAAAGGCAAAAAAATCCAAAGTTGCAGCGCGGGGGAAACCGAAAACACCCAAATAACTTTTCTTGTTGGAAAGTGATTTACCAGAAAATGTCAACATACAAAAAGTACATTAAAAGTTAAACCTTTTTGTTCCTGTGTACATGCAGCTTGATTGCGCCTCCTGAGTAATACCGAAGTGATAGTCAAAGAACACAATTCTCTAACAGAAGTCCGTAACCCTGAAGTCTGGACCTCTCTCATTTTGCATGTCACTAAACAGTATTACGTCACTGCAAAATGTGGATCTTGCGATATCCTGACCAGACAAATTGGCCTTGATTGGCGTAATATTCTCAGATTTGTAGGGTGGGTTGGTAGGCAGGTAGGTTGGTAGGTAGGTAGGTAGGTAGGTGTTTATTAAAGCCACATCGCAGTCCATGGGCTGAATTACGCAATTGTTTGCATACTAAGATTTATTAACGTTTAAGTTATAATGGTTAAAGTATAATATAGATGCAACCTATGTTTAAAAGAGATCAAGTAAACGATAACTTCATAATCAAACCTAAATACACTTATAGCTATGATATATAATTTGATACAATTATCGTTACAAGTTCCACTAATAAGAATTTACGAATAAGATTTGATTTGCTTGGCTGCCATTGCATAAAGGAGAATAAAGGAGTTCTTTTGGCCTATTGGTGCGGACATGAAGCAGGTTCTAAAGACGCTGGTTTCTCAAGTTATACTAAGTATGAATGATTCTCTCAGTTACCAGCGCTAGTGATGTAAGTAGTAGCGAGAGAAAAGCCTGAAAAATTCAGGCGTGAGCGGGGATACGAACCCTGACCTCTGCGACGCCGGTGCACTGCTCCACCAGTTGAGCTATCAGCCCAACCGAGAGCTGGGCGTTGCGTGGGTCCATGATAAGCCCGTAGATGGTGGGTATATATTAAAGTGTGGAGAGTACATGAAATTCATGCATTTTAACTGTGGATTGAAAGAATTTCAGTGTGAATGATCGTCGCAGCTAAAAGCGTTACTTTAGTGGCTAAAGAAAGGCATGAAATTTTCATCACAACCACTCAGCAGGTGCATTCTCAGGTTAAGCATGCGACCAGGGTTGTGTTTGCCTTTAACTTCTCTTTCTGCTCAATGTTTACACGGTGCATTTAAGAAAACTTGCCATATGTCGAATGGTTATCCCTCCTCTCGTGTAGAAGACCACCAAGGCAAGACCAACGACCATAACGTGACAAGAAAGACTATCTCCGTCCAGAAGGTTACTAAGAAAAGACCACCAACCCCCTATAGACAGTAAAAAATGAGCTAAGAGCCGTTCTATTCTGTGTTCAGGGAGTATCTGAGCCTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RRJ0	Flap endonuclease 1 OS=Nematostella vectensis OX=45351 GN=FEN1 PE=3 SV=1
C3ZBT0	Flap endonuclease 1 OS=Branchiostoma floridae OX=7739 GN=FEN1 PE=3 SV=1
B3RVF0	Flap endonuclease 1 OS=Trichoplax adhaerens OX=10228 GN=FEN1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003834 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00867 all species →	XPG_I	XPG I-region	Family	Interproscan
PF00752 all species →	XPG_N	XPG N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036279 all species →	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR019974 all species →	Conserved_site	XPG conserved site	Interproscan
IPR006086 all species →	Domain	XPG-I domain	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR023426 all species →	Family	Flap endonuclease 1	Interproscan
IPR006084 all species →	Family	XPG/Rad2 endonuclease	Interproscan
IPR006085 all species →	Domain	XPG, N-terminal	Interproscan
IPR008918 all species →	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081 all species →	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008409 all species →	Molecular Function	5'-3' exonuclease activity	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04799	FEN1, RAD2; flap endonuclease-1	EC:3.1.-.-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.