Detailed information of FUN_036806-T1 in Siderastrea siderea

Genomic Location: contig_42:3118939...3132106
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_036806-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR001214
all species →		DomainSET domainInterproscan
IPR040415
all species →		FamilySET domain-containing protein 9Interproscan
IPR046341
all species →		Homologous_superfamilySET domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33524
all species →		C5ORF35Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_036806-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_036806-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
83TPM > 0
7Conditions
1,976.3Max TPM
531.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 20 436.25 1,176.76
holobiont · low.pH Control.temp 20 19 784.78 1,577.94
holobiont · control.pH_high.temp 20 20 564.38 1,976.33
holobiont · control.pH Control.temp 19 18 487.96 1,256.55
Whole organism 4 4 29.79 33.55
unannotated 1 1 17.52 17.52
live coral tissue/skeleton 1 1 64.52 64.52

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP