Gene detail

Detailed information of FUN_036979-T1 in Acropora pulchra

Genomic Location: ptg000026l:4087832...4128858
NR annotation: XP_044174480.1, uncharacterized protein LOC114956221 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_036979-T1

ATGCCCCAAACCATCAATTTGAGCGATTTGTATGCCAACCAAATTAAGCTCTGGAGACATAGTTTCACTGCATTACCAAGGGAATTAACCAGAATCAACCTTATTAGTAATAAAATTGACTGGATTCCAGATAGCTGGTTTGATTTACCAAAACTTGAATACATAGGCCTAAGTTATAACAACCTGAAGAGGTTTCCTGGTTCATCATTTGTAAACTGCAAGTCACTGATTTATTTAGGAATAGATGCCAATCAAATTTCTTTCCTCAGTGTAACCAACTTGAAGCCTTTCTATGGAAATGGTTCTAAGCTTGTTCATTTGAATGTCGGCAACAATGCCATTTCTTCAATTTCTACTGGAGCTTTTTCTGGATTGATTCATCTTAAAGTTCTAGAATTGCAAGTGAACAACATAAACTCCATTGCTGCAAAGGTATTTCATGAAATGCCAGAGCTACGGCACCTTGATCTTCGAGCAAATCGTCTGCAAAGCATAACAGCACAGTCCTTTAGTAGTCCATTTGAAAATCTCCCTAAGCTACAAGTGCTGATTTTAAGGCAACAGCAAGCTTATTATAAAACAACAGTTGTGATGTACAATGCATTCAAAAATCTTCCAAACCTTCAGGAGCTGTGGTTAAATGGTAATAGTCTGACACATTTTCCTCATCCAGCCTTATCTCAAGAATCATTTCCTTCCTTGCTGTATTTGCATCTGGAAGACAATAACATCAATTCCTTGTCCAGCTTTTCAAAATCAGCCTTTCCTCCCACTCTTGAAGTTCTGCATGAGTCACAGGAAGTTGTACATAAGCCATTTGAAAAAATCACAAGCTTGCGAAAATTATCTCTTCATAGAAATTTGATAACTAACATTCAGGAGGATGATTTATGGCTTCTTAGCAGTTTACAAGAGCTATATTTTTCCCAAAACAAGCTGTCCAATGCTACAGTGCACCCGGATGCATTCAGAAATTTGACCAGCTTGACTATACTCCATCTAGATTCCAACAACTTTCATTACGTTCCACTATCTGTTCAGGGAAAAAGCCATTTGCCACGAGTGCAAACCCTGCTTTTGAATTCCAACAAGATCACTTTCATTGTGGAGGGAACATTCTCAGAACTTGATACTCTGAATTATCTGGAAATTAGCAGCAATCAGATTGTTGCTATAGAAAATGGAGCATTTCCAGTCACGATAAAAACCCTGAACTTGCAGAACAACAGATTCAATTTTAAGCATGAAAACCAGTTTACAAATTTGTCTCAACTTTCCTCTCTGAATCTGATCAGTAACCGCATAGATGTGGTGCCTAACACTTCATTTCATGGATTATCCTCTTTGACGAGCTTGTCTTTAAACAGTAACAAAATATGCAGGATATTGAAGTTTATGTTCAAAGATCTGACTTCTTTACAAACACTAGATCTCAGTCATAATGATATTGCTTTCATTGAGGATGGAGCTTTCGCCAATTTGCCTGCATTGTCTAGCATGAATCTTTACAACAATCAGCTGACAACTCTTCCAGTGGATGGAGACTTTCATAATAGGAGAATTGACTACCTAGACCTGAGAAGAAACCGAATCACGTCAGTTCCCAAAGGAACATTCATTGGCACAACATGCTCTGCAGGTTGTGGAGGATATTGGGATTTTAGTAGCAACAGAATATCAGTGATTGAAAGTGGAGCATTCCAAAATGTCCAAGGTTGCACTCTACGCTTTTCAGATAATGTATTGAAACACATTGGATCCCATGCTTTTGATAATGTAAATGTGTGCCAAATTGAAATGTATAGCATGCAACTCACAACTCTAGTGACTGAGGCATTCAGGAATGTGGCTGTTTCAAGAAATTTGTATCTTAATAATAATAAGATTGTTACATTCGAGGAAAATCCTTTTCTCTCAGTGACAGTAGGATGGACACTGCATCTTCAAAGTAATGTCATATCAGCCATAACAGGAAAGATGTTTGGTGATTCTCAGACCTCATCAATACATCGTCTGAATTTTATTGGCAATCAGATACAATCCATCCATGATGATGCCTTCAAAGGCCTAAGCAGAATTGTATATTTATATCTGCAGAACAACAAACTGGCAACATTCCCTTCAAAAGCCTTGAAGAATCCGAATCCCTCCTACCTATACCTGGAATATAATCAAATTTCTTCCATCAATCCGGGAGAATTGGACTCGCTTACCAATCTGTACAATTTACAACTTGATGGTAATAAGATACCAAAACTTGCCACCAATTTGTTTCAGAATCAGAGAAACTTACGAACACTAGATCTGATAAACAACCGCATTTCAGTGCTTGAAAGTGGAGCATTTTCAAATTTAGGGAACATTCAAACAATAGTTCTGAGTGGAAACCAGATTGTTTTCCTTCCAACTTTTCCGTCTTTATCATCTCTTCTCGACCTTTATCTACAGAACAACCGAATACAAAACATTGGGCAAAAATGTTTTGGTGGCCTAACAAGTCTTCGAACCCTAGACTTCAGTGGTAATAATCTCGCTTGTGACTGCAATGTCTACAGCTCATTTAATAGCTCTGTAATAAGTGCTCTGTCGTCCGGCCGAGCGGCTCAATGTGCCTCACCTCCAAGAGTTGCCTCAGTGCGTTTTTTTCCTGGAGGATCATACAAAGATCATCCTGTTCAAGATTTCACATGTTCACCAATCAACCTCAACGCGTCAGCGCCAGGAGATTTCCAGCTCCTAGTTAGTTGGAACAGATCTTCAGTGCTGTTCCCATCTATTAATCCAAATGATACCTTTGCGACTATGGCACAGGGCACATCAATATCCTATAATGTAACTTGTGTTAGTGCTGATGCACCGTCGCTTGCTGCTGCAACCCAGAAGGAGTTTTTCCTGTTCACACAAGCTGATGGTGTCAGAGCAGGCATTGATTACACGTGTCACGTGACGATGACCGTTACCCCGCACAACACAACAGCCTTCCCGAATAATGAGAGTGGGCAAGGATTAAACGAAACTCGGACATCCACCATAAGTGAAAAAGTTAGCATCACCACTCTAGAGGGAAGGGCTGTTACCAATTCAACAGTGAATGCTTCCAATTACTACATAGATATATCTTATTATGATTTCCAGTTTTCGAATATCGATTTTACTGGTCTTGGCACCTTCAGCAACACAACATTCAGGAACCCACAATATATCCACAGCCCCTATGGCAGCTGGCTGGCAATTTCCAACACCCCAACTAGTGATACTTTTTCCCAGTGGTTCAGAAGTCACTCAGCGAGAAACATCCACTACGGAGAGAAAATTGAGTTGCAGAAACAGCTGGAGACGGATTCCAATGGCAATGCAGTGTTTCGGCATTTTAATGATAAATTCTTTCCGGTTGATGGGCGAGGATTTGGTGCTGAAGGACAGAGAGACTGTTACACCAATGCGCTGAGGAATTATGGTTTCACGGTTGCCATTCGCACAGCTTTCAACTTCACTGGGGAGGAAAACTTTGCTCTCTCTGGTGGTGAAGAACTTTGGGTTTTTATTGACAAGAAATTTGTTACGCAGATATTTACAGACCCATCACTGACTGATAATTATCCATGTCGGACCTTCAGTTTAACAAATGCTGCGGGCAGTGGATCAATAATCCCAAATAATGGAGTTGTTGTCGGTGGCAAGTGTCAAGTGGCTGGTTCTGTACCATCAGAGACAGTCAGCTTGTATCTCAAGAAAAATGTGGAATACTATCTTGATGTGTTCATTGCTGAAAGATATCGTTGTAATTCTCATATATTATTCCAAACGAGTGGTGTATCTTTCGTGTCGGATGATTTTCGTCCTGGTGCTTATATCGCAGCCGTCAGTGAGACTGTTCATGTTGGATCGATTATCCAGGTGTTTGACGTATCAGACGCCTTTTCTAGTGGCCCATATACTGTGGAGATTTTGAATGGAAATGATCAAGACCGCTTTGAAGTGAAAGATGGTTTATATTCTTCAGTCTCTGCCCCCAGCACTCCTGCTCCAGATACCTTCACATTGGATGGAGAAACGATTTTGTTATGTCCTAACGCCACTGCTGGCCCTGTTACCCCAATACCTACCATTTCACCAGGCATCCAATCCTTCCCATCTATCAATACATCAACTGCAGCCTTGACATTGAAAGCACTGCTTGACTACGAAGCCACCACACACTACTTGTTGTACTTGCGAATCACCGACAACACTAAGGCATTGACAGGCAATATTACAGTAAAGGTGTTAGTCGAGGATTTCAATGACAACTGTCCGATCCTACAAGATGTTAATATTACTTTAGATCTGGAACCTATCCCTCCCCTTCAGTCAGCGCCATTTTTCACCGCCGTGGCAAATGACAAGGATGCGGGCATAAATGCGCAAATACAGTACAAGGCAAGCGCACCGGTTGAAAGAATACCAACCATCAGTGCCACCAAGTTTTATGTGGAGAATGGCAGTAAAGTTGTTTGGAATAACAAGACTGTCAAGTGGACCTATAAATACCAGATATTTGCTGTAGACGGTGGCACGCCAAAACGCGGTGATAGCGTTCCTTTGACCATCACATTCGATGTGTCTTGTGAAAGCAGAGGAACGATTGTAGCAGATGCACACAGTGGAGACGTGTTCTTCAGAGCTCCGGGGCTCACTGGCTCAATTTACCGTATGCCTCCCCACATAAATGTTAAATTCCAGAAATGTTTAATCAATACGCAGATTTACCTTTTGACTTTCAGCTTTTCATTTTTCTCTTCAGTTTTACAAAACCATGAGCCGTGTTTGGCCTAG

Transcript

FUN_036979-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PEZ8	Podocan-like protein 1 OS=Homo sapiens OX=9606 GN=PODNL1 PE=1 SV=2
Q6P3Y9	Podocan-like protein 1 OS=Mus musculus OX=10090 GN=Podnl1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001058 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050328 all species →	Family	Multifunctional Developmental and Immune Receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24373 all species →	SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_036979-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.