Gene detail

Detailed information of FUN_036987-T2 in Dendrogyra cylindrus

Genomic Location: contig_149:494359...523209
NR annotation: XP_020606430.1, GRAM domain-containing protein 4-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_036987-T2

ATGCTTCGCTCCGCTTTCCGTGGAAAACAAGCCGCCGATTCAACAGCAAAAGACGAAAAACAAGGGAAAAGTGCTCATGGAAAATCACACTTTTTCTTTCACCGCGATCATGATGGCGGTGGCGATGGTAACATGAATGAAAATTTGAACACGTTGGTCACCGAAGGTTTATTAAGTTACAGTACAAGCAATGGGGAATTAACCATAGACCCCATAGACTATAATGACGAATTCCTCGAAGCGACACAAAGTGGAAGCTCTGATAAAGAAAGTGTCAATGGCGACGAAAACATGTCAAAGACTTCGTCGCTCAAAAATGGTGCGAAGCCGGATTGCGATCAAGAGGTTATTGAAGCTTCAAGTGGTAGTTTTTCAAGCTCCGAAAGACAGATTTATGAAATGCAGCTTGCTCAGCTGCAGGAACAACTTGTTAATACCATGATTGACTATCAGGATATGAGTGCTCAGTTGGAGAAACTAAAGGCTGTTAATGTCGAAAAACTTCAAAAAGAACTCCAAGAGGAAAAGGCAAAAAATAATGAGTTAAAAGAGAAACTAAAACATAAGCAGAAGTCATCGAGTTCAAAGCTTCAAAGaaaaaatgcaaGTAGAATGGACCCCAGACATGGAAGTGGAATGGCGGCAGATTGTTCAGAGAGAGGCGGGGATGACTGGGTGGATCTCGGCAGAGAGGAAGAGTTACATTCATCACCAGTGTCATCACATGATGCAGATGGCAATGGCGCATCAGGAGTTCACTTGCATGAACATGAAGAAACTTCCCATGATGCACGAGATGGAGTTCATGCTGAACGTGTAGAGGAACAAACAGCTGCTAGATCTGgtgaagaagaaagtaACAGAGTACAGAGAGTCAAAACAAAGCTGGAAATGTGGAAAGCACAAGCAGTAGATCTGCTTTTGGATAGAATGTGGGATTTTGTTAATGATGAACCTGAAGCTACTGATGAAGAGGATGGAGAAGGGGAACCTCTGACTGTGAAAACgTTGAAGGAAAACATCAACCGATTTACTGCAAGTATTAAACCCATCACTAGTTTTATCAAGTCTGTGCACAGAGTTTTCACCTGGCACAATCCAACAGCATCTTTCTTAATATTTTTGGTGTACATGTATTCTGTCTGGCATGGCTTTCTCTTTTCCTTGATTCTTTTCACTATGATTTGGAAGCTGTTTATGAATTATCTCCATGCTAAAGGCATAGCTAAACAGTTGGGATTCACAGAGAAACCAAAAGAAGAGACAAATGCCGCAGATGATCACAGCTGGTCTGACAAATTTCAGTTGGTTTTGCAAGTGGCAAGAAAAGTACAGAACACACTGGGAAAAATGGCAGACTCCCTGGAAAAAGTTAAAAGCTTATTAACTTGGCAACACCCTGAAGCTACAAGAAAGCTCTTTACGgctctctgttttgcattgttaGCGTCTTTCATGTTCAGAGGACCAACACTGTTCCTGCTGATAGGACTTTCTCTGGGAATAAAGTTGTTCATTGTCAATCCTATTTATCATCGCTTTCCAAAGGTCAAGAGGAGATACGATGGTACAGCAAAATTATGGAGAGAACTCCCCACAGACGCAGAACTGTCGGCCATACAAACTGCAGCAGAGGCCAGCCAGGAGATGCCAGCTCGTACCTCTTCAGCGAGTTCTTTATCATCACCAAGTTCCAGTTCATCAGAGCAACCCTCAAGCACCTCGTCAAACCACGTGATCGAGAAATTTAAATTACCATCAAGTGAAGCCATTCTACCAGGCTGGGAAGATGGCAAAAGATGTGCTTTGATCAATAAAGAGAAACCGCTCTCCCACATTAAACATGGACGATTGTTTCTAACTCAAAGTTATTTGTGCTTTGAGAAGGTAAGATCTTCGAGTGGAAAGAATATCGTCATTAAACTGGATACTATTATCAGCGTCAGTAAGgCGAAACCGATTGGAATAATGCCAGGAACAGGAATGGCAATAGAAGTTCACGTCAGAGGAGTCGAAAAGGTACATAAATGA

Transcript

FUN_036987-T2

ATGCAAATCTGATGGGACTTCCATTtagaacaaaacaaatattAGGCATGACGTATTCTTGAAACTTGAAAGTGCAGATAAAACTAAAACATGCTTCGCTCCGCTTTCCGTGGAAAACAAGCCGCCGATTCAACAGCAAAAGACGAAAAACAAGGGAAAAGTGCTCATGGAAAATCACACTTTTTCTTTCACCGCGATCATGATGGCGGTGGCGATGGTAACATGAATGAAAATTTGAACACGTTGGTCACCGAAGGTTTATTAAGTTACAGTACAAGCAATGGGGAATTAACCATAGACCCCATAGACTATAATGACGAATTCCTCGAAGCGACACAAAGTGGAAGCTCTGATAAAGAAAGTGTCAATGGCGACGAAAACATGTCAAAGACTTCGTCGCTCAAAAATGGTGCGAAGCCGGATTGCGATCAAGAGGTTATTGAAGCTTCAAGTGGTAGTTTTTCAAGCTCCGAAAGACAGATTTATGAAATGCAGCTTGCTCAGCTGCAGGAACAACTTGTTAATACCATGATTGACTATCAGGATATGAGTGCTCAGTTGGAGAAACTAAAGGCTGTTAATGTCGAAAAACTTCAAAAAGAACTCCAAGAGGAAAAGGCAAAAAATAATGAGTTAAAAGAGAAACTAAAACATAAGCAGAAGTCATCGAGTTCAAAGCTTCAAAGaaaaaatgcaaGTAGAATGGACCCCAGACATGGAAGTGGAATGGCGGCAGATTGTTCAGAGAGAGGCGGGGATGACTGGGTGGATCTCGGCAGAGAGGAAGAGTTACATTCATCACCAGTGTCATCACATGATGCAGATGGCAATGGCGCATCAGGAGTTCACTTGCATGAACATGAAGAAACTTCCCATGATGCACGAGATGGAGTTCATGCTGAACGTGTAGAGGAACAAACAGCTGCTAGATCTGgtgaagaagaaagtaACAGAGTACAGAGAGTCAAAACAAAGCTGGAAATGTGGAAAGCACAAGCAGTAGATCTGCTTTTGGATAGAATGTGGGATTTTGTTAATGATGAACCTGAAGCTACTGATGAAGAGGATGGAGAAGGGGAACCTCTGACTGTGAAAACgTTGAAGGAAAACATCAACCGATTTACTGCAAGTATTAAACCCATCACTAGTTTTATCAAGTCTGTGCACAGAGTTTTCACCTGGCACAATCCAACAGCATCTTTCTTAATATTTTTGGTGTACATGTATTCTGTCTGGCATGGCTTTCTCTTTTCCTTGATTCTTTTCACTATGATTTGGAAGCTGTTTATGAATTATCTCCATGCTAAAGGCATAGCTAAACAGTTGGGATTCACAGAGAAACCAAAAGAAGAGACAAATGCCGCAGATGATCACAGCTGGTCTGACAAATTTCAGTTGGTTTTGCAAGTGGCAAGAAAAGTACAGAACACACTGGGAAAAATGGCAGACTCCCTGGAAAAAGTTAAAAGCTTATTAACTTGGCAACACCCTGAAGCTACAAGAAAGCTCTTTACGgctctctgttttgcattgttaGCGTCTTTCATGTTCAGAGGACCAACACTGTTCCTGCTGATAGGACTTTCTCTGGGAATAAAGTTGTTCATTGTCAATCCTATTTATCATCGCTTTCCAAAGGTCAAGAGGAGATACGATGGTACAGCAAAATTATGGAGAGAACTCCCCACAGACGCAGAACTGTCGGCCATACAAACTGCAGCAGAGGCCAGCCAGGAGATGCCAGCTCGTACCTCTTCAGCGAGTTCTTTATCATCACCAAGTTCCAGTTCATCAGAGCAACCCTCAAGCACCTCGTCAAACCACGTGATCGAGAAATTTAAATTACCATCAAGTGAAGCCATTCTACCAGGCTGGGAAGATGGCAAAAGATGTGCTTTGATCAATAAAGAGAAACCGCTCTCCCACATTAAACATGGACGATTGTTTCTAACTCAAAGTTATTTGTGCTTTGAGAAGGTAAGATCTTCGAGTGGAAAGAATATCGTCATTAAACTGGATACTATTATCAGCGTCAGTAAGgCGAAACCGATTGGAATAATGCCAGGAACAGGAATGGCAATAGAAGTTCACGTCAGAGGAGTCGAAAAGGTACATAAATGAGAAATTAAATTTTGCTTACCTGTGCAATAGATTTAGTTTGCGGGTTTTCACGCCAGTTTAGAAAGAAATTTGTTTACGAGAGCATAACATCGGAATTTAGTGGGCATCCTAGTCTGATTCCGATTCGGGAGCCCTTGAATCTTCGTGTCCGAGTGAATAAGACCGCGCTTTCTACAGGGAGTACGGGTGTTATAACCTGCAGTGCAGCTGGACGTGTTATAAGCAGTCGATATATGTATTGAAGTCGGACTATACCGGTATTGTAGACTTCTTTGACGCCGGGTAGGGTTTAAAACTTGCATAGTAACATAACGTATCCTGACTGCGGCATGCTTGACGTAGCAGTGTCCGGATTTCTCGTGTTATTCCTAATTGGGCAATGATAAGCGGACAGTCTTCCATTGATTTACGTATAATTTTACCAGGATTGCACAAACCGTCACGTTCCTTGTGAATGGGAAGGAGAACCGgtatcttgtttttgttttttttttcaattcagtAACTCGTTCACTGTTCTGAACTCTCTTATTTTGCTAGCCGTATATTTTCGGAGCAATCATTGGTAGAGATGATGTATTTGAGAGCATTAAAGCTACAGGAAGAGCAGCAAATATACCATGGGCTTCAATGTGAAACGGTGCTCATAAAACTATGAAATccttaacaactattcacctcagt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02893	GRAM	GRAM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004182	Domain	GRAM domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR037847	Family	GRAM domain-containing protein 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37402	GRAM DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0034164	Biological Process	negative regulation of toll-like receptor 9 signaling pathway	Interproscan
GO:0043280	Biological Process	obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23554	GRAMD4; GRAM domain-containing protein 4	-	Membrane trafficking	ko04131	deepkoala