Gene detail

Detailed information of FUN_037335-T1 in Dendrogyra cylindrus

Genomic Location: contig_155:301652...309805
NR annotation: CAH3183826.1, unnamed protein product [Porites lobata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_037335-T1

ATGGCAAGTAACGATGCCAGCTCTGCTTCTTTGGAGAGCACTGTTAGGGTTTTGGTGTCGTTCTTCCTGGCTACAGACGAGGATTCTAGCGCCAGAAGTACGGCGCCGATCCACAAGGAGAAGTTTAATGTTCCGCTCAGTGAGGAGCACAAAGAGCTTTTTAAATTTCAACAGCATTTAAAAGCATTTACTGGATTAGATGACATTGCAAGAAATAAAGGCCTCGGGGAAAACCCTGAGGTCACGATTGCTCGAGTCCAAAAGGCATCAGGCAATGGCGTTGAAACTTTCTCCTTGAGGACTCAAGATGCCTGGCAATATGAGTTTGACACTCTTATCCGGGGAAACAGGATGCTTCAAGTTAAAATCGTTCATCGACTTACGGCGTGGGTAACTGGAACCCCAGTGCTCCAGCTGGTTACAAAAACAGACACCAACTCAGCTGCAACAAGAGGTCCAACTGGAAGTGAAGGCCAGGGCCAGATAAAATCGATTGTATCAAGTAAGCAACCTAAAGAATctaatgtcattgcaaaggaTCGCATCCCAGTGAGGTATCTATCCCTGGAAGATCTTCGAAGATGTACTGGTGATGAAGGAGGTGGATGGCTCAACTGTTTTGTTATCAACCACTACATTCAGTTGATAATAGACTCTTACACTTGTGGAGGGGGGATCTACCAATTGGGGCTACTAACTAGCAACAAGTTACATTCTGTCCAGACAAAGCTGTCTAGTCTCAAAAGAGTAGCAAGAGAACTTTCTAAGGAGAAAATCCATCAAAAGGATTTCATTTTTGTACCTGTTAATGAAGACAAACAGCATTGGTGCTTGATGGTTATCAATCTAAGGGATCAAGAATTTTACTATCTTGACTCCATGGGTGTTGGAAAAGGAGGACCGGAATATGTTCTCTTGGCAAAGCAACTATTCAGTTTGATGCCACTACCTGGGCATAACTGTGAGAACTGGAGAGTTAAATTATCACAGTATGCCTTGGGTATCATGAGAGGAAGTGGCATGGAATTTGAAGTGATTGTTGCTGAAGTTCATCAAGTTGTAGACGTGTTAAACAACCCTATTGTTCCAGTGGTGACTTTGGCCTTCGCAAGTACGGTAACAGTTTCTTCGTTACAGAATTCCACAGTGCCGGCGGTCCAAAGTTCTTCCACGTTGACACCAAGCACTTCCATCTTCTGGAAGTTCTCAGGGTGGTCTCAAGCTGGTGATGCAGGGAAATATCTTGTTAGAGCTTTCCTATGTCCCCTTGGAGAACAAACTGCTGATTCTTTCTCGCACACCTTGTCCAAATCGGACTCAATGTTGTCCAGACACTGCTTGGATGTGGTTGAGACCAACTTTGGAGGTTCGACTGGTCACAACTTAGATCTGATAGCGTTAGATTCTAATGTCCAACGGAGTCACCAGGGATCCCCGCTGCACCATTTCATGCCTTACCCTACACCTGGATCTGCAGGAGTTAACGTGTTTAATCAGGATTTGACATGTTGTGACGGGGTCATCATCAATGCCTACATGTTTCCTCCTCTTTCCATGATACTCCTGTTACTTCGCTTCCTGTTGTCACAGAGAGCAGTTTCGACCATGGTCGTGCCATCTGCAGGTAGGAGTGGTGACGACTCATCCATGCCAGGTTCTGGAAACCCAGCGGTGTCAAAGTTGGTCAAGGAGTATTTAGCGGCAGTAAGAGTCAAACAACTAGAATCAAGAGTCCTGCCTTCTCAAGCTGATCCCTTCTTTATCTCGGACCTCTCAGCCGTAGCAGCTCATATTGGGAGTCGTATAAATAAACATGATCTTTCCTCGTCTCAACTCTTTGTTTTAACTCGGGACCAGGCCTTCTTCAAGACTTTATTTTTCGCTGGGGACAGGGCAGGCGATCTCGGTAGAGTTAAAACTCAGGAATTACTGTATTTTCCTTGTAAGGAGGGTTTACTTTTTAACCATGTGTTAACCAAGACCCTGCGAGATGGCTCCtccaatttattttctttaaaacgttACACCAAAGACCTCTCGCTCTGCCCAGTCACGGCTATTGAAGTTTACATCTCAGTGAGTGAATTGCTGGGTATGTCACTACGACAAGGTTACTTGTTTTGTCCAACAACGCCTTCCGGGGAGGTAGCCATAGGACCATTGGATTTGTCAGCAGCGCAAAGTCGTTTGTCCACCTATGTTCAAGAACTCCCTCTGGTGTTTGGTACCCATAGGATTACATTGCATGGATTGCGGAGTCACTGTGCTATCTCGTTAGCAATGTCTGGAGTGGATTTGCAAACCATTATTGACCATGTTGGTTGGAAAACTCCAAGTACCGCACGTCACTACTTCAGAATTGAGCGGGTATTACAAACCGGAGGAGCTGGTGACTCTTTGGCTGAGCTCCCATTTGACTTAGCTGAACTCtattgtaaacaaaatgaaattacgGGTTTCACGCAAGCCTTCAACATGATTACTGGATACTCAGGAAACCCTTTGTTGTAG

Transcript

FUN_037335-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000274 (this species only)
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00589 all species →	Phage_integrase	Phage integrase family	Family	Interproscan
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR002104 all species →	Domain	Integrase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12606 all species →	SENTRIN/SUMO-SPECIFIC PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016926 all species →	Biological Process	protein desumoylation	Interproscan
GO:0016929 all species →	Molecular Function	deSUMOylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_037335-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.