Gene detail

Detailed information of FUN_037367-T1 in Acropora pulchra

Genomic Location: ptg000026l:9638167...9653495
NR annotation: XP_044174767.1, guanylate-binding protein 7-like isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_037367-T1

ATGGCTGCAAATGCAGGCTTTGCCATACCTCTGTGCCTTCCAAACAACTGCCAGTGGAATAAACAAACAGGTGAAGTCAGCCGCAGCAGCGAGCAAAGAAATAGTCTTTACGTGGTGGATGAAGCACTTCACCAGTTGAAAAAAATCAAAGGTCCCGTTTGTGTTGTGTCAATTGCCGGTCCTTACCGCAAAGGAAAATCGTACATTCTAAGTAAAGTCTTTGATCAAGGTGAGGTGTTCCCATTGGGCCGATACATGGACCCAGAGACAATGGGAATATGGATGTGGATTGTACCAAAGAAGATAAAGGACACCAATGGCCAAGATTTGACGGTGGTCTTACTGGACTCTGAAGGAACCGATGCTGTAAGAGGTGAAGGATCAGATGATCATTGCATCTTTACTTTGACCATATTGCTGGCTTCGGTGTTGGTCTTCAACTCAGTTGGTGTTCCATCGAGAAATGACTTTGATGAGTTAGCCTTTATAGTGAAACTTTCTCAGTGTATCCGGATTCGATCAACCGATCAGCAAGGCACAGAACATCAAGAGGACACCAAATTTTTTTTCAAAACTTTTCCATACTTTATCTGGTTGTTAAGAGATGTTTTCTTGCAACTTCCAATAGACTGCAGTGACACCAAGGAATACTTCCTGAAGAGGGTTTTTAAATCAGAATCAGCTTCACAGGATGACAATGCAGGAAAGGTCGGTGAAAGTATCCTAAACTTCTTCCCTGGATTTGACGCTTTCACGCTCCCTCTTCCTGCATCAGAACCGGAAGTGCTCTTAAACTTAAACCGCGAAGAAGTCCAACAGGACATCAGCAAATCATTCACTAGGGGCGTGCAAGAATTTAAAGCGTTGCTGTTTCCAAAGCTTTCTCCCAAGCGGAGTTTTCAAGATGGAGAATGTGTTACTGGAGAAGCACTTGCTTCTCTGGTTAACATTTATGTTGAGGCCTTGAATACCCCTGGTATGGTTCCTAGCGTCCAAAGTGCATGGGAGACGTTTATTCACAAAAAGTGTACTGAGGCAAAATGTGCCGCCGTGCAGGTTTACGACAAAGCGACGTCGACTCGACTGGTTAAATGCAAGTTGCCGTGTGACAGTGACGACATCAGGAAAATACAAAAGAATGCTGTCGAAGAGAGTATGGCCGTGTTCCAGGCAGAAACTGTTGGAATCTCTGCCATAAACAGTGTAAAATATCTAGAGAAGTTGATGGAGTACATGGAGGAAAAACTGAAAGCTTTGCAGGAACGCAACAACGATCTCACCAGAGAGGAATGCGATGCTCTGCTAAAACGCCTGAAAGAGGAGAGGTTGGATCCGATCATTGCACTTCTGTATACTGAAGGCGGCTCCAAGGTCAGTTTTAATGACATTGTTAGCGGTTACTCGGCTATTGAAGAAGACTTCAAGAACCAATCGAGAGGAGCAAAGGATGTTTGTGCTCAGGTGTTCTACGAGTTTCACCCGGAACTCCAGAAGAACATGCAAAAGCACATGGCCCTTTTAGAGCGCCTCATAGATTATGACTTAAAGGAGGCGCAACGCAAAGCAGAATTGGCACACATGGAGCAGGAAAGAAAAAGAATTGAGGAGCAAAATAAGCGCATAGAAGAAGAACGAGAGACTAAAGAACAAGAGATGAAGCTGCTGCAGAAAAAAATGGAGGAAGACAGAAGACGCTTGGAAGAACAGTTCAGAACTGACATGGAAACTCAAAGAGTGCTTATGCAGGATATGATGACAGCCAATATGAATGAGCTACGTTCAGAGAGACAGGCGACTATTGAGCAGAACCAAATTCTATTGGACACCATAGAGGAGCAAAATAAACGCATACAAGAAGAACGAAAGACTAAAGAACAAGAGATGAAGCTGCTGCGGGAAAAACGGGAGGAAGACAGAAGACGCTTGGAAGAGCAGTTTAGAACTCAAAGAGTGCTTATGCAGGATATGACAGCCACTATGGATGAGCTGCGTTCAGAGAACCAGGCGATTACTGACCAGAACGAAACTCTACAGGACACCGTCACAAGCATGAACGAAGCTATGGAGAGGCAAAATGGCCAGATGCTAAGGCTTCAGAAACAGATTACTGCACTAGCCAATCCTCCTTCACCTCCCTCATCAGAAGAGGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATTCATGCGTCATTCTCTAA

Transcript

FUN_037367-T1

AATGTTCTCGTTTTCAAACAGGAACAGATATTCGTCATTCTCGAAATATCGGTCCGACACTAACCGCAGTTTATCCTAGATTGTGTTGGTTTCCTGATTGGGGAGGGAAAGAGGCGACAATCTTCAAGGAAGACGAAACGACAGTTGACCACAACCTGACTTAATAATGGCTGCAAATGCAGGCTTTGCCATACCTCTGTGCCTTCCAAACAACTGCCAGTGGAATAAACAAACAGGTGAAGTCAGCCGCAGCAGCGAGCAAAGAAATAGTCTTTACGTGGTGGATGAAGCACTTCACCAGTTGAAAAAAATCAAAGGTCCCGTTTGTGTTGTGTCAATTGCCGGTCCTTACCGCAAAGGAAAATCGTACATTCTAAGTAAAGTCTTTGATCAAGGTGAGGTGTTCCCATTGGGCCGATACATGGACCCAGAGACAATGGGAATATGGATGTGGATTGTACCAAAGAAGATAAAGGACACCAATGGCCAAGATTTGACGGTGGTCTTACTGGACTCTGAAGGAACCGATGCTGTAAGAGGTGAAGGATCAGATGATCATTGCATCTTTACTTTGACCATATTGCTGGCTTCGGTGTTGGTCTTCAACTCAGTTGGTGTTCCATCGAGAAATGACTTTGATGAGTTAGCCTTTATAGTGAAACTTTCTCAGTGTATCCGGATTCGATCAACCGATCAGCAAGGCACAGAACATCAAGAGGACACCAAATTTTTTTTCAAAACTTTTCCATACTTTATCTGGTTGTTAAGAGATGTTTTCTTGCAACTTCCAATAGACTGCAGTGACACCAAGGAATACTTCCTGAAGAGGGTTTTTAAATCAGAATCAGCTTCACAGGATGACAATGCAGGAAAGGTCGGTGAAAGTATCCTAAACTTCTTCCCTGGATTTGACGCTTTCACGCTCCCTCTTCCTGCATCAGAACCGGAAGTGCTCTTAAACTTAAACCGCGAAGAAGTCCAACAGGACATCAGCAAATCATTCACTAGGGGCGTGCAAGAATTTAAAGCGTTGCTGTTTCCAAAGCTTTCTCCCAAGCGGAGTTTTCAAGATGGAGAATGTGTTACTGGAGAAGCACTTGCTTCTCTGGTTAACATTTATGTTGAGGCCTTGAATACCCCTGGTATGGTTCCTAGCGTCCAAAGTGCATGGGAGACGTTTATTCACAAAAAGTGTACTGAGGCAAAATGTGCCGCCGTGCAGGTTTACGACAAAGCGACGTCGACTCGACTGGTTAAATGCAAGTTGCCGTGTGACAGTGACGACATCAGGAAAATACAAAAGAATGCTGTCGAAGAGAGTATGGCCGTGTTCCAGGCAGAAACTGTTGGAATCTCTGCCATAAACAGTGTAAAATATCTAGAGAAGTTGATGGAGTACATGGAGGAAAAACTGAAAGCTTTGCAGGAACGCAACAACGATCTCACCAGAGAGGAATGCGATGCTCTGCTAAAACGCCTGAAAGAGGAGAGGTTGGATCCGATCATTGCACTTCTGTATACTGAAGGCGGCTCCAAGGTCAGTTTTAATGACATTGTTAGCGGTTACTCGGCTATTGAAGAAGACTTCAAGAACCAATCGAGAGGAGCAAAGGATGTTTGTGCTCAGGTGTTCTACGAGTTTCACCCGGAACTCCAGAAGAACATGCAAAAGCACATGGCCCTTTTAGAGCGCCTCATAGATTATGACTTAAAGGAGGCGCAACGCAAAGCAGAATTGGCACACATGGAGCAGGAAAGAAAAAGAATTGAGGAGCAAAATAAGCGCATAGAAGAAGAACGAGAGACTAAAGAACAAGAGATGAAGCTGCTGCAGAAAAAAATGGAGGAAGACAGAAGACGCTTGGAAGAACAGTTCAGAACTGACATGGAAACTCAAAGAGTGCTTATGCAGGATATGATGACAGCCAATATGAATGAGCTACGTTCAGAGAGACAGGCGACTATTGAGCAGAACCAAATTCTATTGGACACCATAGAGGAGCAAAATAAACGCATACAAGAAGAACGAAAGACTAAAGAACAAGAGATGAAGCTGCTGCGGGAAAAACGGGAGGAAGACAGAAGACGCTTGGAAGAGCAGTTTAGAACTCAAAGAGTGCTTATGCAGGATATGACAGCCACTATGGATGAGCTGCGTTCAGAGAACCAGGCGATTACTGACCAGAACGAAACTCTACAGGACACCGTCACAAGCATGAACGAAGCTATGGAGAGGCAAAATGGCCAGATGCTAAGGCTTCAGAAACAGATTACTGCACTAGCCAATCCTCCTTCACCTCCCTCATCAGAAGAGGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATTCATGCGTCATTCTCTAAACTGGAAAATCCCAAACTTTGATGAATAGACCCCAAAAGTGGGGTCACGTTTAAGTAATTCATGTTATTTGTTAGGTGTAAACTGCTGCATCAGTCTTTTTGTCGTCGGCATGCAACAGAGAGCTTAAGCAAGGGCCTCGTCGTCGACAGTGAGAACATCATCTTAAAATAAACATTGCATTTCTGCAATCGTTTCTTGATTATTCCAAGTCCTTAAGCCTGAAAAGTGATTCCAGCTCCCGCGGAGTTAAATAGGTGTCAGCGGTTTGGGGATTGAGGAAAAAAATTGAGAAGTCGTTAACGAGTGTTCCCGGCCGTCGTTCAAACAACTGCAAACAAGTCTTGTCATGTCGTAGATTGGACGACAACAGTTGCGAAATGCAAAAAAAAAAAAACAAAATGACACAAAACACGTGCAAAGCGTGCAAAACTACTGTTTCATTTTTTCGTTGTCAAATGTGCAAATTTTAATCGTTCTTGTCGCGGTCGAGGTCGTGGTTTGTTAAGCTCACTTATATGTAAACTCAAAATGACGTGATAAATAGAAGGTAGTGTTACTTTTAAGAGTGATGCGTTAAACCCAGCGGAAAGTAAGAGATAGAGAGAGAGTACGGATAGGGCTGGAAAAGGGTAAACATCACAAAAGAAAGTTTTTGTAGCATTAGAAGTCGCCTCCACTTGATATCTTCTTCTAGATTACATCATATGAAATTATTTGAATGCGTCACGTTGCATTGTGTGATGGTACCTCACAAGCATAGCGCTACTTACAATTCAACTTCTGTGATTAAGTATACTCTTCGTTTGTTCCTGAGGTTCAGTCAGAAACAAACGTCCGTCTCTTTTTCAGCTAAAAATAGTTCGACTTTAACTCACTTTTTCTGATATCCGACCTTGGTGCATGCCTTTCCTTATCTCCCATTTTCTACTTCTTTAAGCTAGAGAACTCGTTAGTCATGGTGTCGAGTTATTGTTGAGAAAAAGAGCACGTTAATAGGAGCTGGAAGTGAAGTTTATCCACAGTTTGTTTAGCCTGGACAATCTTACTCGGTTTACTCTCAGTTTTGTAGTATAGCTGCCCAATAGGTAGTATGCCTGCAGTAGTAAATTCAAGTTAAACTTTCGTTAAAATTTATCTTTTCATCATTTTTCCTTCAATTAGTTTTGCATTTAAGCAAAGATAGAAAACCGGACTGATTTGGGAGTGAACAGAATTTGAATTAATCGAAATAGATTTTAGAAACTCAAAACATCCTCATCATTTCGTTTAATGTTGTTTCTAAGCATCATGCATGTACGGGCAATCAGTGACGTTCTTTTGAATTTCAGTGGGTTAGTTGTTTTAGATCACTAAATGATCCACATATTCTCGTTAAAAACATAAGTGCGAATACTCAGTATTTTAGTGTAACCACTCTTTTTCAAAGACATTGCTTAAAACGTCTGGACATTTCCTCGACTGTAGCACTAGAGAACCAATTAGATTGTGTACGGCTTTACTCTTAAGAAAGAGGCAGACCACCAATCAACCGTGGAACTGTGTACCAAAAGCATGAGTAAAAGAGCTGTTTACTTAGTTCAATCTACCTATATTATTTTCTTGTCCTGTTGAAAAGGGAGAGCAGTGTTATATACAAGAAGGAGTTCTTCCGAGGCGTGTTAAATTCCTTCCGACCAAACAAGAGCATATTAAGTGGATGAGAACCATCACAACGCTCGTTGACTTTTGGCAACCGGCTCGTCGACTGTTCCCCGTTGAATTTAAACCTCGAATAATTTAAGTTCAAATTTTTGCGAGAGCTGGCAAGAGTTCATAAAGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61107	Guanylate-binding protein 3 OS=Mus musculus OX=10090 GN=Gbp3 PE=1 SV=1
Q8BH66	Atlastin-1 OS=Mus musculus OX=10090 GN=Atl1 PE=1 SV=1
Q60HD2	Atlastin-1 OS=Macaca fascicularis OX=9541 GN=ATL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02263 all species →	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan
PF02841 all species →	GBP_C	Guanylate-binding protein, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015894 all species →	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR030386 all species →	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan
IPR036543 all species →	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan
IPR003191 all species →	Domain	Guanylate-binding protein/Atlastin, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751 all species →	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20899	GBP1_3_4_7; guanylate-binding protein 1/3/4/7	-	NOD-like receptor signaling pathway	ko04621	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.