Gene detail

Detailed information of FUN_037489-T1 in Acropora pulchra

Genomic Location: ptg000026l:11029576...11042214
NR annotation: XP_029194625.2, LOW QUALITY PROTEIN: calcium uptake protein 1, mitochondrial-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_037489-T1

TTAGATTGAGCAAAATCACTGCCAAGCCTTTTTAAAATATACCATTAGTTTTCATTGATGCGCAAATCGGTACACTTCAATTGACATATACGACATGTATACTTAAGCAGCGCCATTTTGAGTGTGAAAGGCCTGTACTGCAAAGTTGGTCTTTATATATGTTTGTGTTTTGGAATAATTCTTTGTTTTTAATCTGCCTGGAAAAAAGGATAATTCAAGGATCATTATTCATCAATTATGCTCAAGAAAATTCCTAGAGTAGCAGTTTTACGAAGACTTGCGTCGGACAACCTGACAAGCAAACAAAACCAAATGTCATGGTATTTCCACTGCGTGAGACTTGCGAGTGCAGACGCCCGAACTCGTACAAGTGGAGAAGATTTTGATCGAGAGGCTTTCAATCGCCGTCAGAAGCGGCTCGTAGCCGCCATCATCGGTTCATCTGTGGGATTGATCGGCTCAAGTTATTGTTTGTACCGGAAACTTAGCAAGGCTAATGCAGGAAGTCCTCAATCTTCGATAAATTATGAAAGAGTGAGTAATGTTGACGAAAGATCCGGTGAGCATGAAAAGGAGAGCGGTGAAGACGCTGATGGACAAAAAAAGAAAGAAAAGAAAGGATTTAGAGAAAGAAGGATAATTGAATATGAAAACCGTATCAGACAGTACAGCACACCAGACAAGGTGTTTAGATACTTTGCTTCCCTCAAAGTTGTGCACATTGGTGAAGACAATGAAGTGTTTATGACACCTGAAGATTTTGTGAGATCATTAACTCCTGGAAAAGTGCAACCACCTGGACTGGGACTTGATGAACATGAGAAATTTAACCCAGAGAAGCACAAGTATAAAGGCCACATATCAGAGCAGCTGGGTCAAGACAGTGTTTTCATGAAGATGGGAGAATATGGACTTATCTCATTCTCCGATTACATTTTCCTGCTCACAGTCTTATCACTTCCTCCTAGAATGTTTGAAATTGCCTTTCAAATGTTTGACCTGAACGGAGATGGTGAAGTGTCTCCAGCAGAATTTGAAAAGGTGCAAAGCATTCTCTTCAATTTGACATCAACTGGCCTTCGCCATCGGGATCATGCAATAACAGGCAGTGTCCTCTCGGCTCATGTTAACAGTGGGTTGAAAGAATATTTCTTTGGTAAAAACATGGAAAAGAGACTAACAGCAAAAAGATTTACAGAATTTCAGAGGAAGCTTCAACAAGAGGTCATGCTTTTAGAGTTTCATTCTTATGATCTTCAAGATGGTCGAATTAAAGAATGGGAATTTGCTGATATGCTGTTAACCTACTCCAGTTTTCAAGAAAAGAAGAAGCAAAGAATTCTCAGAAAAGTCAAAAAGTCCTTCAAAGGTGATTCCCAGGGAATAGCATTCAAGGACTATTTGGACTTCTTCAGTTTTATGAGAAACATTTCTGAGGCAGACATGGCACTGAGTTTTCATAATGCTGCTGGCAAAGCCATTAACCCTGAAACATTCAAACAAGTTGCAAGAACAGTAACAGGTGTGAATTTAACAGACAATATTGTGGATGTTGTGTACAAGATGTTTGATGAAAATGATGATGGGGTTTTGAGCCACAAAGAGTTTATTGTGGTTGTGAAGAACCAGGTGGTTAGAGGACTTGAAAATCCCAAGGACACTGGATTTGGCCGACTCATGCAGGCTGTTTGGCATTGTGCAAAACGTGTTACTCACCGAACCCTTCACCCCAAGAAACTGGCAGCAAAAGATTAACATGTTTGAGCTGTGTAAAGAACATTGAGGAATGGACCAATCAGTAAAATAGTTTTCGAAAAACACTATTATGTTATTTGGGGATTGCTTACTCCATTTGGCGCTGAGAGGTCCCTCATTGATAGCCATAATGGAGAATAATCTGAAAGTGTTCATTGTTAGGGAAAGGGTTGAACAAGAAGAAATACAGTGAAAATATAGTGTCACAAATACTTAACATCAGAGGTTATTTAATCAATAAAGGAAAATACTAAATTGTTGCTTGGATGCAGGCAGGATGTACAAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B1H2N3	Calcium uptake protein 1, mitochondrial OS=Xenopus tropicalis OX=8364 GN=micu1 PE=2 SV=2
A2VEI2	Calcium uptake protein 1 homolog, mitochondrial OS=Drosophila melanogaster OX=7227 GN=MICU1 PE=2 SV=1
Q4R518	Calcium uptake protein 1, mitochondrial OS=Macaca fascicularis OX=9541 GN=MICU1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13833 all species →	EF-hand_8	EF-hand domain pair	Domain	Interproscan
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR039800 all species →	Family	Calcium uptake protein 1/2/3	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12294 all species →	EF HAND DOMAIN FAMILY A1,A2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0006851 all species →	Biological Process	mitochondrial calcium ion transmembrane transport	Interproscan
GO:0036444 all species →	Biological Process	calcium import into the mitochondrion	Interproscan
GO:0051560 all species →	Biological Process	mitochondrial calcium ion homeostasis	Interproscan
GO:1990246 all species →	Cellular Component	uniplex complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22827	MICU1; calcium uptake protein 1, mitochondrial	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.