Detailed information of FUN_037515-T1 in Siderastrea siderea

Genomic Location: contig_43:5734518...5736064
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13649
all species →		Methyltransf_25Methyltransferase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR041698
all species →		DomainMethyltransferase domain 25Interproscan
IPR051419
all species →		FamilyLysine/N-terminal Methyltransferase SuperfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12176
all species →		SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_037515-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22857EEF1AKMT4; EEF1A lysine methyltransferase 4EC:2.1.1.-
Translation factorsko03012deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_037515-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
24TPM > 0
7Conditions
72.2Max TPM
2.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 4 4.50 72.24
holobiont · low.pH Control.temp 20 8 2.28 10.87
holobiont · control.pH_high.temp 20 3 0.94 9.94
holobiont · control.pH Control.temp 19 3 1.07 11.45
Whole organism 4 4 1.51 3.10
unannotated 1 1 0.69 0.69
live coral tissue/skeleton 1 1 1.22 1.22

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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