Gene detail

Detailed information of FUN_037527-T1 in Acropora pulchra

Genomic Location: ptg000026l:11399416...11413172
NR annotation: XP_029194685.2, E3 ubiquitin-protein ligase Smurf1-like isoform X4 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_037527-T1

CAAACATGGCGTGGACGCAATTTCAGCCGTGGCAAAATCAGCCGCTCCCTGCAGGCTGGGAAGCAAGATACGATCAGAATTATGGAAGATATTATTTCATTGATCACAGTACACAAAAGACTACATGGGAGGATCCAAGGATGAGGAAAGAAGAGTCTATCCCATTGAATCAGTTTAAGGCAGAGACCAGTTTTGGTGGCTCATCATCCAGGCAACCCTCGTCTTCAGTGGCAAAGGAATCTTCACATCTGTCCACTCTTGATGATGACCCGGAATTGCTTGTCAGCAGTCTTTCCTACAATTTGCCCCAAGAGAAGAGTTTTAGTGAAAAGGAAATAGTGAAAGAGAAGCTGATGGGCGAGTTTCCGACTGTTGATGAAACAGTCATGGAGGTTGCACTTCGCAGTACCAAATATGATGAAGACAAAACCAGAGATCTTTTGGTGAAGTTTAAAGCAAAAAAAACCGAGCCAGCCAAAAGCAAATCCCCTGCAAATGCTGCGTCCGGTAGCGACAAAAGACTGGATGAAGCAGCGAAAGCAAAGACCACTTCTTCCACTGCCAAAGCCAAGAGTTCAGCTCAATCCAAGGCCACCGCAACGGTGACAAATACCGGTGAAGCCAAAAGCAAAGCCCCGGCAAAGGCAAAGTCAGGCAGCGAGGAACGACTGGGTCAAACAGCGAAGGCAAAGACTACTTCTTCTACCGCCAAAGCTAAGAGTCCAGCTCAACCCAAGCCTACCACAACGGCTGGGACAACGGGCCGAGGACTCTCTGTGACAACGTCAGAATCGATCATTGATTCTAGCGCAGGTGGTGGGCACATGTCAGTTGCGGAAATGACTGGTCGTTCGGGAAAGAGGCTGGAATCTGGTCAATCAAAGCAAGCTGCCCAAAGAAAAGTCTACGTGGGTGCTGGTAAATCTTACAAGTCTTCATTGCTTTGCACTCCAGTGGGAGCAAACCCAGACAATGCTAAAGGACCCAATCCGGTGCTTTTGTTACCGGAGTGGGTGATGCCCGACGGGCCGCAGTACAAAAATCGTCAGGGCCCCCAGCGAAGCAACTGGAAGGGACCTGCCAGACGGACCCCAAAGTGCGGTCCTCAAGCGAGTAACTGGTCAGGACCTGTTCCTGGCTCAGCCAAAGGCTCAATTTATGACATCGCTAAGATGACTTACCTTTAAATGCCGATCGTGTATCATTTACCATAATTAACGCTGTTATCACCTTTTTTTTTTCATCGCTTAAAAATGACGAGACACCTGGTGACGATTACACTGATTAATATTCCATTCATGCTGTTTTTCGATCACGTGATCACCGATCGTGTTGATTGGAAGAAACAGTGAAATATGTGCATTTCAAGTTCATTTGCTGATAATTATCTTACCACTAGTTTATTGTTGGCTTGCACCAATACGACCGCTAACACGATCCACAGGAATAGCGCACGGTTTCTAAGGAAGCTGGAAAACTGATCGCAAAAATAACCTTACAAATTTGAAACCAGTAAGCTTTCAAATTGTTTCTACGAAAGCGTCTCTGTAAAGCGTCTCTGTAAAGCGTCTCTATTTCACAGAATATGGACAAAACGTTTTTGTCCCATTGTTATAAGCTCGCTTTAAAATATATGAGTAACTAAACTTAACGGGAAATGTCAATTTGAGTGGTGGGAACAAGTGCCAACTCATTTCCGATTTAATTACGCAACTAAACAGTTAGCGAATCGCGTTGGTAGGTACTTGTAGAGTGTTTTCACTCACGTGATTAATGTTTGTCAACCAAAACAAAAGATACGTTAGCATAAGAATAGAGTTCAATTCCCGAAGGATTAGTCGGGGACAGCAACATGGCCGACGCGACGTCACGAGAAAACACTCTATAGCCTCAGACGGCTTTTTAATTGACATAATAATCATCAACCACTTAAAGACTGAGTTCAAGTCCGGTCCAGTTTTCATGCGGTAATGTAACCGTCACTGTGCTTTGCGATTTATCAACTGATAGGACACTTCAAGGTGCACGGAGAAACCGTCTTTCACCAAAGTGCCCCGGGTACATATTTTTGTGAATTGAAATGTTCAGTTCAAACAGGAAACAGTCCTTCGAGTTTGTTAAGGAGAGTATAAAAATTAATATTTGTTTGAATTCTTCTGTTACCCGAAAGCTAGATGGGATGCTTCGTTTGCAATGTGAATTTCAATTGGTGGTTTCAAGTGGCATCAACGCCGCCATGTTGGTGGACGAAAATAAAGATTTCTCGTCGAGTTCTTTTGTTTGTCCATCGGAAATTGTACATTTTAATATTACCACCTGTGCTCTAGAGATGGTTGAAAACCTATTTATTGAACCTTTTCTAATAATATAGTTTACATTAGTATGCACATGGATTTAATTGGGTGAGTCAGAGGTCCCGAAAATCATCAAAGGATTCTCCTTGGCGTTCCTTGTGGTATAGAATAAAATTAAACTTAAACATGCTTTTAACTGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006948 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR051105 all species →	Family	WWC/KIBRA Hippo Pathway Regulators	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14791 all species →	BOMB/KIRA PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0019900 all species →	Molecular Function	kinase binding	Interproscan
GO:0035330 all species →	Biological Process	regulation of hippo signaling	Interproscan
GO:0046621 all species →	Biological Process	negative regulation of organ growth	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_037527-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.