Gene detail

Detailed information of FUN_037536-T1 in Dendrogyra cylindrus

Genomic Location: contig_160:118561...122729
NR annotation: XP_020611112.1, ALX homeobox protein 1-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_037536-T1

GTTAGTCATCTCTGCCTTCCAGTGGCAATGGTCTAGGGTTTCTGTTAACAACTAGCACTGCTTTCCTAACGAGGCGCCTAAAGCTTCAGCGTGTAATCAATCCTTCCTTTCTGACGGAAACGAGCGCGCGCGTTTTTATAAAAGCGCACTTCGGGAGCGCTACCACATTCATTTCAGCGGCGGCTTCCACGGGAGCGAGAGAGGGATTATGAATTTTCATCCTCCAACGTTTAATCTCATGTTGTCTGAAGGCGAATCCTATGCGCACGCAGCTGGGGTAAATGTTCGCTACTCGTGCGCGACAAATGGTGGATCAGATGCAAATTTATTCCATTACCCGGTTACTCTTGGTAGTTTAGCAGACTTGAGTTCGGACTCCGAAGTCGAGATAATCGAAGCCATAGAAATTCCTATCTTACCCAAGAAGCGAAGGAGCAGGACGAACTTCGACGCTTGGCAACTCGGAGAGCTGGAGAAGGTTTTTCGTAGAACGCAGTATCCAGACGTTTTCACCAGGGAAGCACTGGCCCTGAAGCTCGACCTGCTTGAATCAAGAGTCCAAGTCTGGTTTCAAAACAGGAGAGCAAAACTACGAAGAGAAGAGAAAACCAAAGCGAGGCCTGGCAGGAGAGAGAAAAGTGAGGTTGAAAAAACTGCTGTGACTTTGAAAATTCTCGAGGTGTTCGACAGGGCTTCAGAGAAGAATTCAGAGGAAACCGATCCTCCCTCACCACCGAGTGTGGAGAACAATGCACAGCCATCGGTCTCATCAAACTCTTTTAGCATCGAGAGCATTCTGTCACGAAAAGACCCTCCACATCAACATATCGAAAAACAAGTCACTGTTTCCCAAAATATCGGTAAAAGCTTTCGAATTGAACAACTTATTGATGCGACTAAAGAAATGAAGGATAGAGTGACTGACAAGAATAGTTCTATTACCCGCTCAAGGGAGCCTGCATGTGTTGCAACTACACTGTCAAATACTACTTTATGTAAAACAACCATCTCTGAAAGAAGAGAATCggaaaaagaaaaagtcaaCTGCGACAAGAATGACATTTCGTATGAAAAAGCTACAGTCCTAGCACCATTTTATGTTCCAATGGCAAGACATTGTGGTTCGTATCAGGGTATACCCGAAAGATACGTCCACACCGAAAATGTGTCACCTTACAATGCTGAAATGTTTGAAAACTTTCGTAGTTCTAGTATCTTGCGATTGAGAACGAAAGCAGAGGAACATTCGAAGCAACTTCGAGTTTCTTATGTTAGCTAACTTGACTGACcttgaagaaaacaaacagcAATCTTCAATTGCATTGTTTTAACGTGTGACTTTTGTcatgaatgttttttttctgttccaAAATCGTTTTGTTTTCTTACAATCCCAGTATTTAAATACATTTTGTTGTGTACCGTATGCTCGCTCACGTTTTTTTATGCAACAACAATGAATCTTAAATTCCATTGTAAGTTTTTACAATCAATATATTCCCATTCTTTGTACAAAGCTCTTCTTTCTAGGGACTTCAATTCGCTTTTCAGTTTAGTTTTCCTCGAGAAAAAGtcattatttatatattttttgtgccgCCCATTTAGAATTGATGCCGTAGTTTATTTGATCCAATTATGCCGCATTCCTCATGTTCAATTTCTACTCAACTCGTATCTATCTGTACAGATGGAATTCCTCTGACATTTGATAACTACAAGTGATAAATTATCTTTTTTCGTGACTTCGTACTTGTCAATAACTGTCTCGTTAGGGACTGCTAAATACCGATAGATGATCGTATATTGTTAGGATACTAAATCCTCCCACTTTTTTGTAACCAACCTTCTTCTATCCTAAACCCTGACAATTCTCCTTCAAACTCACCCAGTAGCAAAAAAATACATTTCGTAAAGAAAAATTCATCAAAGATATTCAGTTATTATTTGTGAAGGACCATGTTTACATTAAGTAAAACTGTAACAGATACCTCAACTGTCTTTGAGATATTTTCAAGAAGC

Protein

Uniprot

Uniprot term	Description
O08934	Homeobox protein unc-4 homolog OS=Mus musculus OX=10090 GN=Uncx PE=2 SV=2
A6NJT0	Homeobox protein unc-4 homolog OS=Homo sapiens OX=9606 GN=UNCX PE=1 SV=1
Q50D79	Homeobox protein unc-4 homolog OS=Danio rerio OX=7955 GN=uncx PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46799	HOMEOBOX PROTEIN UNC-4 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:1990837	Molecular Function	sequence-specific double-stranded DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan