Gene detail

Detailed information of FUN_037719-T1 in Dendrogyra cylindrus

Genomic Location: contig_163:162389...183993
NR annotation: XP_020630819.1, protein quaking-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_037719-T1

TAACCCATAACAGCAACAATGTCTTGTTCTGTCGCTTCTTCTGAATACCTTAATGAACTACTGAGCGACAAAACAACAGTATCGAAAATGCCCAAGATATTTCTTCACGCCGAACGGTTGCTGGATCAAGAAATCAACAGAGTAAGAAATGAGCTCTTCCATGGTGTGATAAAAAATGAATCAGATGGAGTATTAACAGAACTGCAGCTTCCTACACCATCGGGGCCAAGAGTTAAATTGACAGAAAAGGTTTATGCACCAGTGAAAGACTACCCCAAGTTTAATTTTGTTGGTAGAGTGATTGGCCCTAGAGGCATGACGTTACGTGAAGTAGAGTCCACCACTGGCTGCAAACTTTTAGTCAGAGGAAAAGGATCAATGAAAGACAAAAAATTGGAGGAAGAAAAGCGAGGCCAGCCAAACTATGAACATCTAGATGAGGATCTTCATGTGTTATTATCGGTGGAAGATACAGAGGACAGAGCAAAATTAAGACTAGCAAAGGGTGTTGAAAGAGTCAAAGACCTTCTTCAACCTGTGAATGAAGGAGAAGATGAATTAAAAAAGAAGCAGTTGAAAGACTTAGCATTAATGAATGGTACTCTGAGGGAACAAGCAGgCAATGCTACTCTTCTACACAATGGGCTACTCGGAATGCCCCTTGCACCTGCATTAGCTGGATATCCATTTGCAGCTCGACCTCCAGTTCCCAGTGCATACCCAGCTGGACTTGCAGGGCTAGAATTTGCACCATACACAACAAGACCAGGAGCTATTTTTGACTATGGACTGGAACCATCCATTGTTGGTGCAGTTAAACCGCGGAGACCTATCAGAGAACACCCATACCAGAGATAAGGCATGAAATTCCGAGTGATCAAGTAGTGAGGAGAAgagtggaaaataatttttaacatattattTTTATTCAGAGAATTCATTCACATAATTTACATTGATTTTTGTATTGATGTTTTTGAACCCTTGCTGATTTTGATTGCATGATTTGCCTCTCCTTCATGCATAaaatcaataattattattctgtTGTTTTCCACAATGGATAAAATGGGAGAGGGAAAAGTTTTGGGAAAAGGGTGGTATAGTACAGTATAATTGCACAAGGTGGCTGTTGGTTATTCATAATCCTGAGCATTATATCAAGTGCTATGTTTATTCATGTTTACTCTGCCAcgtatattttttaaataacagttgaaatattttgatgaaaatactGTATTTCCTTTGAAGTGGTGGCCCAAGGAATGTCTTCCCACGTGCTAGGTGGTTACAAGGCTAGGTGGTTACCAAGCTGGGTGGTTACCAGGCTAGGTGGTTACCAAGCTAAGGTGGTTATGAAATTAGTTTCCAGGCTAGGTGGTTACCAAGCTGGGTGTTTACCAAGCTAGATGGTCACCGAGCTAGGTGGTTTTAGGCTTGCCGGTAGTGTATTAGGTGTCCAGCCACCCCCTAAATATAATTTGGCCTCACTGACTCTTTTGAGGCATGGCCTAGGAAAAtttaaagtaaaagaaaaatttggTAGCCCCTCGTCATCgccacctccccctccccagAAATTTCAATAAATGAAGTAACGTTTGTTCCCCGTGGTGAGCAGTGACAAGGTTAGACTAGTTTCCTGGTTAAGTTGTTTCACTGTCGAAATTGATGTGCGTTTGTTGTGCCTTGTAAAAGGTAACCAACGAATTCGAACGGCACTGGACTTGTTATTAGTTTTGGTTTCACAAGTCATTAGATGCCGCTCTGTTTAATTGAAGTTTGTAATTTTACTTGCGTGATGTACTCTTCCAAGCGTGTATAAATATACCTTTGTGTCACAAAAAATGTACGTAATAATTCAGTAACACGTAGCTGACTCAACTGCTGATAGTTTTCAAATAATATATTGATTAATAAGAGATATTTTTACAGAAAAATTTAATATATACGATATGAGAGAATATTAATAAAGCACTTAAAGAAAATCGTA

Protein

Uniprot

Uniprot term	Description
Q9YH18	KH domain-containing RNA-binding protein QKI OS=Gallus gallus OX=9031 GN=QKI PE=2 SV=2
Q32NN2	KH domain-containing RNA-binding protein qki.S OS=Xenopus laevis OX=8355 GN=qki.S PE=1 SV=2
Q6IRN2	KH domain-containing RNA-binding protein qki.L OS=Xenopus laevis OX=8355 GN=qki.L PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16544	STAR_dimer	Homodimerisation region of STAR domain protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004087	Domain	K Homology domain	Interproscan
IPR045071	Family	KH domain-containing BBP-like	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR032377	Domain	STAR protein, homodimerisation region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11208	RNA-BINDING PROTEIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0048024	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14945	QKI; protein quaking	-	Spliceosome	ko03041	deepkoala