Gene detail

Detailed information of FUN_037735-T1 in Dendrogyra cylindrus

Genomic Location: contig_163:419625...442012
NR annotation: CAH3146673.1, unnamed protein product [Porites lobata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_037735-T1

ATGCTACAACGGCTGTTTTCCTCGAGGATACTCTTTAAGTCTGGATTGATTCGACCAATAAACATTGCAGTTAAGAATTTTACAGGAAATATGGCTTCCGCCGACGACAAATTCAATTTGATCACAAGAAATTTACAGGAAGTGATTGGTGAAGATCGCTTGAGAGCAATAGTTCAGGAGAAACCACTCTCTTTGTACTGGGGAACAGCTACCACAGGAAGACCACATGTTGCATACTTTGTGCCAATGACAAAAATTGCTGACTTTTTGAAAGCAGATTGTGAGGTGACTGTTCTGTTAGCAGACCTTCATGCATATCTGGATAATCTCAAAGCACCTTGGGATCTTTTGGCACACAGAGTCAAGTACTATGAAGAACTGATTAAGGCAATGCTGGAATCAATAAATGTCCCTCTGGGAAAATTAAAGTTTGTCCGAGGAACAGAATATCAACTGAACAAAGACTATGTTTTGGATGTATTCAAAATGACCACAGTGGTTACTGAGCATGATGCCAAGAAAGCTGGAGCAGAGGTCGTTAAACAAGTTCAACATCCTCTTCTTAGTGGCCTGTTGTACCCTGGCCTGCAGGCTCTTGATGAAGAATACCTTAAAGTGGATGCACAGTTTGGAGGCGTAGATCAGCGCAAAATATTCACTTTTGCTGAAAAGTATCTTCCCTCCCTAGGTTATACTAAGAGAATCCATCTTATGAATCCCATGGTTCCAGGCCTTACTGGCACCAAGATGAGTGCATCAGATGAGGATTCAAAAATTGATCTACTGGATGGTGCTTCTCTTGTAAGGAAAAAATTGAACAAGGCATTCTGTGAAGAAGGAAACATTGAAGAGAATGGCATTCTTGCTTTTGCCAAGTTTGTTATCTTTTCAGTTTTGGAAACTAGACATCAAACAGAGTTTGTAGTTGAAAGAACAGAAGAGAATGGGGGAACAGTTTCATTTAAGGACTATGCATCCCTTGAACAGGCATTTGCCAGGAAGGAACTTCATCCGCTTGACCTGAAAAACGGAGTTGCAAACTTCTTAAATGAGCTTCTAGATCCCATTAGAAAGAAATTCCAAACTCCAGAACTGCTGAAGCTGACAAAACTTGCCTATCCTGAGCCTAAGAAAGCTAAGGGTGGCAAAGGAGGTGCAGCAGCCGTCCCTGACAGAGGGGTTGACCCATCAAGATTAGACTTGAGGATTGGAAAAATATTGACGGCAAAAAAGCATCCTGATGCAGATTCGTTGTACATTGAAGAAATTGACATCGGAGAAGAAAagccGAGGACAGTAGTGAGTGGTTTAGCGGAGTATGTACCTCTGGACGAGCTTCACGACAGACTTGTTGTAATGATGTGTAACCTGAAACCTGTTAACATGAGAGgCATCAAGTCAGAAGCGATGCTTATGGCGGCGTCCATAACAGGCTCTGATGGAAAGCGACAAGTTGTCCCTCTGTGTCCGCCAGAAGATTGTAAACCCGGTGACAGAGTTGTAATAAAAGGATACGAGCATGAAACAGCAGGAGCTCCAGATGAACAACTAAATCCGAAGAAAAAGATTTTTGAAACAATAAAGCCTGATCTTTGTACCTCAGACGAGGGTGTTGCTGAGTACAAAGGAAGCCCTTTTGTAGGAAATCATATCCGGAGCCTAGCGTCTTTTAACGCAGCTGCAAAATTGAAAAAGTTCTTACAGACGTTTGGTGCGAATTCCGATGAAGCCGAGATTATGAGAGATCTGCAAAATGCAGCGTGTTTATATGATAAAGCTGAGCTTGCCGGCAGAGATTACGCCAGAAAGGCAAGAAACTGTGCTGAGGAAAACATCTTGGTAGCCAATGGTGTTCTACAAGGAAAGACGTATTACCAGCCGGAAGATATCATCGATGCTTTTGAGGACATGGTTGACGGTCTTCTTGAGGAATACGGAGTGGTTGAGCAAAAATACAACGTTGTAGTAGATCGTATGGCACTGATTTCAAACAAAGCTGGAAAGGCAAAAGTTAGAGCTCAGAAAGTACTGAAAGACGCGGAGGATGGTATAGTGCGTCATGCTCCTGTAGCGGCCCCCTTCGTTGGAGCGGTAGAGTGTGCTGAGCTGTTTTCCAGCGCTGCCGACAACATACCAGCGAAAGCTGTTTTGGGCTTCGTTGGAGCAATAGCAGGAACCGTTAAAGGGGCTATTACTAGTGCGCTTCTTGTGCCAATGGCGTTAAACATCGCTGACCGCGTCAAATACCAAGAGATAACCAAAGAGCTTGAAGAGCTAGTGAAGGAATTAAATACAGTTGAATACATCATAAAAGAGCACAGAGAGTTGTTGACGCAGATCAACCGACCCGTGAAGAATCTTTCCCAGAAGTACAAATCAATTAAAGGCCGCAAAGAGTTGAGGCCAGCAATGCTAGATCGCATTGTTAAAGAGTCTAAGGACTTGATATCTGCCTGTGACAATTATTTACGGAAATGA

Transcript

FUN_037735-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6TGS6	Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio OX=7955 GN=yars1 PE=2 SV=2
Q5ZJ08	Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus OX=9031 GN=YARS1 PE=2 SV=1
P54577	Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=YARS1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001647 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF01588 all species →	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR002307 all species →	Family	Tyrosine-tRNA ligase	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR051270 all species →	Family	Tyrosine-tRNA ligase and regulatory protein	Interproscan
IPR002547 all species →	Domain	tRNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11586 all species →	TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004831 all species →	Molecular Function	tyrosine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006437 all species →	Biological Process	tyrosyl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_037735-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.