Gene detail

Detailed information of FUN_037746-T1 in Acropora pulchra

Genomic Location: ptg000026l:13070816...13085942
NR annotation: XP_029181563.2, LOW QUALITY PROTEIN: vinculin-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_037746-T1

ATGCCCGTGTTCCACACCAAAATTATCGAGTCGATCTTGGAGCCTGTTGCACAACAGGTCTCAACGCTTGTGATCCTCCATGAAGAAGCAGAAGATGGCAAAGCTATGCCTGATTTGGCATTGCCAGTACAGGCAGTTGGAGCAGCTGTTCAGAATCTTGTCAAGGTGGGTAAAGAAACTGCTGCATCCAGCAAAGATCAAATTTTGAAGGAAGAAATGCCTCTGGCTTTTACAAGAGTAGAGGAATCTTCCATCCTTTTGGTTGAAGCATCTCACATTTTAAGACAAGATCCTTATTCTTCAGCAGCCCGAAAGAAGTTAATTGATGGTGCTAGAGGAATTCTTTCCGGTACATCTGCCCTTCTTTTGACATTTGATGAGGCTGAAGTGCGAAAGATTTTGAAAGTATGCCGTGGAGTGTTAGAGTACCTATCAGTAGCTGAGATCGTTGAGAGCATGGAAGAGTTAGTCACATTTGTTAAAAATCTAACTCCTGGTATCACTGAAATGGCTAAGAAGGTGGAGGCTCGAATTGAGGAGTTGACTCACCAAGTACATGCTGATATGTTGAAGAAGTCAATAACTGCTGTGAAAGCCATGTCCACACAGTTAATTACTTCAATCAAGACCTATGTTTTGACTGTCCAACGAGGAGGGCAAAGCATGGCAGAAGCTCAAGAATACAGAAATTTTGTTGTTGGAAAGATGTGTTTTGAGATTAGTGAAATCATTAGAGTACTGCAGTATACCACGTACGAAGAGGAAGGTGGAGATGATCCACTGAATGATATGAAGAAAGCTGCCTCTCTCTTTGACAGCAACATGGGAGCTGCTATGAAGTGGGTTGCTACTCCAACAGAATCTTCAGGTGGATTAGGTGAGAGAGCTGTCCGAGAATGCATTACGCAGGGACGCAAGTTTGCTGATGCTTGTCAAGGGCCCGATAAGGGGAGAATAAAGAAAGTCTGTGATGATTTGGATGAACTGATGGGAAATTTGGCACAGCTGAGAAAACTGGGCAAGGGTACAACTCCAGAGGGTCAAAAATTGAATAAGGAAGTTTCCAGGCTACTTGACGATTTGAATACTCAAATGCAGAATGCAACCTTGATGCAAGAACGATCTGGAGTGCGAAGGCCAGCTACGACCTTTGCTGGAAAAATGGATCAGGTCCATCAGTGGATGAACAATCCTTCTTCGGATCCATCTGGTTTAGGTGAAAGAGCTATCCGTGAGTGTATCGAGGAGGGACGTGGCATAGCTGAGAAATGCTCTGGTCCAGAAAGGAGTGCAATAGTGCAACTGTGTGATGACCTTGATCTGCTAACTGATGAAATTGCAAGCATGATGAGAAGGGGAATGGGAAACTCACCACAAGCAGCTGTTATTGCACAAAAGATTGAGAAAAAATTAGAGGAATTAAACAACAAATTGCAAAATGCAGCAATTGCTCAAGTTGCTGAAGATTTCATGGACACAACAAGTGACTTGAAACAGTTGGAGAAAGCTGCCAAGGCACCTGCAGATGCACCAGATCGTGAAGCAGAGTTTGAGAGCAAATCAGCTGCATTTGAGGATCAGGCAAATCAGATTGCAGATACTGCAGTTAAACTGGCAAATGCTGGTGGCAACACAAACAAGAGACTTTTGGATCAAATTAGGCAAAATGCTGAGGAATTGAAGGAATTAACTCCTCAAGTTTCACATGTTGCTAAAATACTTTTGGATTATGGCAAACATTCCCCTGGTGATGTCCCAGCAGTGTCTGTTCATTTTGACAGTATGCGAGACAACTGGAAAGACAAGATGCAAACTCTCACTAATCTTGTGGACAGTGCAACAGACACTGGAAAATTCATTGAAGCCTGTGAGACGGCAATTAATCAGGATGCTGAAATGTGCAATGCTGCAATGGATCAAGGGAATCCACAGTTGGTGATAACGAAAAGCTCAAATATTGCTCGCCGAGCAAAGAGGGTTGTGGATGTCGCAGAAGCAGAGATGGAGAATTCTTTAGATCCAGAATACGTTTCCAAAGTTCAAGCAGCTAAAGACACTTTGGGAAATTCTATCACACCACTGGTCATTGATGCTAAAGCCGTTGCTACAAATCCCACCGACAGAAATGCTCAACGGAAGTTAAGGGATTCCACAAGAAAGTTGCAAGGTGCTGTGTCTGGAGTGAGAGTCATAGTCCGGGGACCAAGTGAGCCTGCGGAAGAAGATTTCCCTCCGCCTCCACCGGATATCTCAGGGTTGCAAATTGCTTCAGAAACCGCACCACAACAGGAGATGCCTCCCCCCCGACCACCCCTCCCAAAAGAATCAGCACCGCCTCCTCGTCCACCCCTCCCATCCGATGAAATGGTGGAGGTGCAACAAGTATTAGAACAACCACCTGAAGACAACAGAATGGCGATGGCCGCCCATCATTTGCACAGAGAAGCTCTTAAATGGGATGAAGAAGGAAATGAAATCATCCAAGCTGCTAAGAAAATGGCTATTCTCTTCGCAAAGATGTCGCAGTTTATGAGAGATGCAGAGGAAGGTCAGCCTCAGCGGTCCAAGAAAGAACTCATCGCTTTAGCGAAGGAAATTGCAGCGGCTAGCAAAGAGGTTTCAGCGTACTCTGCTAAGGTCGCCAAAAACTGCCCTGATAAAAGAGTTGGCCAGACACTGTCGCAAACAATCGAAAGGATTCCAACTATCAGCACGCAGCTGAAAATTGTTGCTACAGTCAAGGCCACCATGATCGGAGCTGACGATCCACAAGCTGATCTGGAAGCCACTGAAACTCTCGTTGGGTGCGCGGAAAACCTGATGGCAGCAGTGCGGCAAGCAGTGAAGGAAACCGAAGCGGCTTCTGTTAAGATGCGTTCAGCTGCCATTTCATTCAAGAAAAGATAG

Transcript

FUN_037746-T1

CGTGGTTTTGCGCTGCTGCGCGCATTTTTGGTAGGGGCTGGGTGTCCGTAGGTGTGGACACTTTCCGAATTCTTCTGCGATTCCGCTTTGCCTTATTTTAATTTCTTGTGTCCTTCACTCAAGACGGTACTGAATGAGGCTTTAAAATGCCCGTGTTCCACACCAAAATTATCGAGTCGATCTTGGAGCCTGTTGCACAACAGGTCTCAACGCTTGTGATCCTCCATGAAGAAGCAGAAGATGGCAAAGCTATGCCTGATTTGGCATTGCCAGTACAGGCAGTTGGAGCAGCTGTTCAGAATCTTGTCAAGGTGGGTAAAGAAACTGCTGCATCCAGCAAAGATCAAATTTTGAAGGAAGAAATGCCTCTGGCTTTTACAAGAGTAGAGGAATCTTCCATCCTTTTGGTTGAAGCATCTCACATTTTAAGACAAGATCCTTATTCTTCAGCAGCCCGAAAGAAGTTAATTGATGGTGCTAGAGGAATTCTTTCCGGTACATCTGCCCTTCTTTTGACATTTGATGAGGCTGAAGTGCGAAAGATTTTGAAAGTATGCCGTGGAGTGTTAGAGTACCTATCAGTAGCTGAGATCGTTGAGAGCATGGAAGAGTTAGTCACATTTGTTAAAAATCTAACTCCTGGTATCACTGAAATGGCTAAGAAGGTGGAGGCTCGAATTGAGGAGTTGACTCACCAAGTACATGCTGATATGTTGAAGAAGTCAATAACTGCTGTGAAAGCCATGTCCACACAGTTAATTACTTCAATCAAGACCTATGTTTTGACTGTCCAACGAGGAGGGCAAAGCATGGCAGAAGCTCAAGAATACAGAAATTTTGTTGTTGGAAAGATGTGTTTTGAGATTAGTGAAATCATTAGAGTACTGCAGTATACCACGTACGAAGAGGAAGGTGGAGATGATCCACTGAATGATATGAAGAAAGCTGCCTCTCTCTTTGACAGCAACATGGGAGCTGCTATGAAGTGGGTTGCTACTCCAACAGAATCTTCAGGTGGATTAGGTGAGAGAGCTGTCCGAGAATGCATTACGCAGGGACGCAAGTTTGCTGATGCTTGTCAAGGGCCCGATAAGGGGAGAATAAAGAAAGTCTGTGATGATTTGGATGAACTGATGGGAAATTTGGCACAGCTGAGAAAACTGGGCAAGGGTACAACTCCAGAGGGTCAAAAATTGAATAAGGAAGTTTCCAGGCTACTTGACGATTTGAATACTCAAATGCAGAATGCAACCTTGATGCAAGAACGATCTGGAGTGCGAAGGCCAGCTACGACCTTTGCTGGAAAAATGGATCAGGTCCATCAGTGGATGAACAATCCTTCTTCGGATCCATCTGGTTTAGGTGAAAGAGCTATCCGTGAGTGTATCGAGGAGGGACGTGGCATAGCTGAGAAATGCTCTGGTCCAGAAAGGAGTGCAATAGTGCAACTGTGTGATGACCTTGATCTGCTAACTGATGAAATTGCAAGCATGATGAGAAGGGGAATGGGAAACTCACCACAAGCAGCTGTTATTGCACAAAAGATTGAGAAAAAATTAGAGGAATTAAACAACAAATTGCAAAATGCAGCAATTGCTCAAGTTGCTGAAGATTTCATGGACACAACAAGTGACTTGAAACAGTTGGAGAAAGCTGCCAAGGCACCTGCAGATGCACCAGATCGTGAAGCAGAGTTTGAGAGCAAATCAGCTGCATTTGAGGATCAGGCAAATCAGATTGCAGATACTGCAGTTAAACTGGCAAATGCTGGTGGCAACACAAACAAGAGACTTTTGGATCAAATTAGGCAAAATGCTGAGGAATTGAAGGAATTAACTCCTCAAGTTTCACATGTTGCTAAAATACTTTTGGATTATGGCAAACATTCCCCTGGTGATGTCCCAGCAGTGTCTGTTCATTTTGACAGTATGCGAGACAACTGGAAAGACAAGATGCAAACTCTCACTAATCTTGTGGACAGTGCAACAGACACTGGAAAATTCATTGAAGCCTGTGAGACGGCAATTAATCAGGATGCTGAAATGTGCAATGCTGCAATGGATCAAGGGAATCCACAGTTGGTGATAACGAAAAGCTCAAATATTGCTCGCCGAGCAAAGAGGGTTGTGGATGTCGCAGAAGCAGAGATGGAGAATTCTTTAGATCCAGAATACGTTTCCAAAGTTCAAGCAGCTAAAGACACTTTGGGAAATTCTATCACACCACTGGTCATTGATGCTAAAGCCGTTGCTACAAATCCCACCGACAGAAATGCTCAACGGAAGTTAAGGGATTCCACAAGAAAGTTGCAAGGTGCTGTGTCTGGAGTGAGAGTCATAGTCCGGGGACCAAGTGAGCCTGCGGAAGAAGATTTCCCTCCGCCTCCACCGGATATCTCAGGGTTGCAAATTGCTTCAGAAACCGCACCACAACAGGAGATGCCTCCCCCCCGACCACCCCTCCCAAAAGAATCAGCACCGCCTCCTCGTCCACCCCTCCCATCCGATGAAATGGTGGAGGTGCAACAAGTATTAGAACAACCACCTGAAGACAACAGAATGGCGATGGCCGCCCATCATTTGCACAGAGAAGCTCTTAAATGGGATGAAGAAGGAAATGAAATCATCCAAGCTGCTAAGAAAATGGCTATTCTCTTCGCAAAGATGTCGCAGTTTATGAGAGATGCAGAGGAAGGTCAGCCTCAGCGGTCCAAGAAAGAACTCATCGCTTTAGCGAAGGAAATTGCAGCGGCTAGCAAAGAGGTTTCAGCGTACTCTGCTAAGGTCGCCAAAAACTGCCCTGATAAAAGAGTTGGCCAGACACTGTCGCAAACAATCGAAAGGATTCCAACTATCAGCACGCAGCTGAAAATTGTTGCTACAGTCAAGGCCACCATGATCGGAGCTGACGATCCACAAGCTGATCTGGAAGCCACTGAAACTCTCGTTGGGTGCGCGGAAAACCTGATGGCAGCAGTGCGGCAAGCAGTGAAGGAAACCGAAGCGGCTTCTGTTAAGATGCGTTCAGCTGCCATTTCATTCAAGAAAAGATAGAATCGAAGAGAATAGAATTTGAACAATGCAAAGATGAAGTAAAGGTTGTAGTTTTGGCCTGGGATATGTAAATTTGAGGGTTTTTTTTTTAGCTTAAATAGAAAAGAAAAGTATTTTATGGAGACGTCTGCGTAGAAATCAGGCGTGCTCAATCACAAATTGTGTTCCACTTGAGATGGAATCAGACAATATCATTATGACGAGCGCTGATTCATCGTTGTGGCGTCAAGTAGGGCGTTTTGAGGAGAAGGTCATCAAAGTGACATCTTTGGTTTCTAAAAAGAACGTTTTTGAAATTTACATATCCCGCCCCCATTTTCTTTTATTCCTGTATCCCAGTCCCTTATTTTCTATTGAGTTTGTAAAGTCTGCTTGGACATGTTTTCAAGGGAGGCCGCTTTCTCCAACTATCTAGTTATCTCGAGCTTTCTGAGTTTTACATTTCCGACAATTTTTTTTTGGAATGATTTCACTGCTTGTTTTGCCGGGGTTTGAGTGAGGCTCGTGGGCGTGAAGAGTTGTCATTTGACGACGCAAGACTCACCGTGAAAGGTCATTTACACACGTGCTCATATGTTTAACCGCTTTACAGCAATCCAACTGTCTCTCTTTTACAGATAATATTAGTTCAAGAACAAATCAAGTGTGATCTTGGTTTGTTCCAGTGCGGGTATTTTTCGAAATTTGGGGTGCACAACTGCTAGTCTATGAATTGGGTAGAATCTAGAAGCGCATTAGGTTGTTGTTTTAGAGGGTGACTTTGGGTTCTCTACAATCAAACATGTGTAGCCAAGATTCTAAGAGGAAAGTAAGTCAGGAAACGGCTGCAATTTTGCCGCATAAGCACCTTTTCATTCCTGTTCTAGTCTCCAGAGCCCCAGCAATTTTTTAATCAACAGGAGCTCTGACCCGAGTTGCTCGAAGCACGGTTAGCGCTAAGGTCACACAAGCGTTAACCACCACAGAAACGCATTGGTTTCGATACTTCTGAACCTATGGTTAGCGCTAAGCATGCTTCGAGCAACCGGTCCCGGGACGCTAAGATGACCCGCGCGCAGTTCAGTGCAAAGAGAATTAGTCCAGTTTTGTTGATATTAGCCTTAAATTTTGTGAGTTTAGGGGTAGAACTGTGGCCCAATTTTTAAACGTGCGAATCCTTGAGAAATCGATTACAAAAACTTGTGCAGACCGTAGTTCGCTCGAAGTTATTTAGTGTTAATATATTTTTTTAAAAGAATCTTGCGCGACAGCGCAATAGCTCAATTTTACTAATTTTCTGACCAGCAGTAAAGTGGTTGCAAATAGATAGGTAGAATTTTAGGCCATTTTTCATAATTTTGGATAATTTTTTTGGAGTGAATAATATAATGACAAGATGAATAATTGCACGCTTAGTGCTGGTGTATTTTTCAGGGCATCGTCCTTCATTGGTTGTCATTTTGTAGGCACAAATAATATATTTTTTAGTGTTAGCAATATCTTAACAACTAATGTCAGTGTTCTAAGGAATGATGGAATTTTAATGGTGTGGGTTGTATTACAAGGCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P85972	Vinculin OS=Rattus norvegicus OX=10116 GN=Vcl PE=1 SV=1
Q64727	Vinculin OS=Mus musculus OX=10090 GN=Vcl PE=1 SV=4
O46037	Vinculin OS=Drosophila melanogaster OX=7227 GN=Vinc PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006571 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01044 all species →	Vinculin	Vinculin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036723 all species →	Homologous_superfamily	Alpha-catenin/vinculin-like superfamily	Interproscan
IPR006077 all species →	Family	Vinculin/alpha-catenin	Interproscan
IPR017997 all species →	Family	Vinculin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46180 all species →	VINCULIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0008013 all species →	Molecular Function	beta-catenin binding	Interproscan
GO:0044291 all species →	Cellular Component	cell-cell contact zone	Interproscan
GO:0045294 all species →	Molecular Function	alpha-catenin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05700	VCL; vinculin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.