Detailed information of FUN_037804-T1 in Acropora pulchra

Genomic Location: ptg000026l:13747950...13748672
NR annotation: XP_015765332.1, PREDICTED: sex-determining region Y protein-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9XS37Sex-determining region Y protein OS=Bos mutus grunniens OX=30521 GN=SRY PE=3 SV=1
Q67EX7Sex-determining region Y protein OS=Moschus berezovskii OX=68408 GN=SRY PE=3 SV=1
Q863C0Sex-determining region Y protein OS=Przewalskium albirostris OX=1088058 GN=SRY PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000488 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505
all species →		HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009071
all species →		DomainHigh mobility group box domainInterproscan
IPR036910
all species →		Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR050140
all species →		FamilySRY-related HMG-box transcription factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10270
all species →		SOX TRANSCRIPTION FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0009653
all species →		Biological Processanatomical structure morphogenesisInterproscan
GO:0030154
all species →		Biological Processcell differentiationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_037804-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP