Gene detail

Detailed information of FUN_037809-T2 in Acropora pulchra

Genomic Location: ptg000026l:13806881...13819594
NR annotation: XP_029180700.1, E3 ubiquitin-protein ligase RING2-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_037809-T2

TTTTGTTGAACTTGTTGGTTCCGTGTACTTGAGATAAAATTTACCGTTTGTAATAATTGATCTTTATACAGGAGAAACTATCTGCTATGGCAATTCCAGTGATGCCACAACCGGTTCAGCAACCGAAATCATGGGAACTGAGCCTGTATGAGCTTCATCGAACACCTCAAGAGGCCATTACAGATGGAACTGAGATTTCTATCTCACCTCGCAGCCTTCACAGTGAACTCATGTGTCCTATTTGCTTAGACATGCTGAAAAACACAATGACAACAAAAGAGTGTTTGCACAGATTCTGTCAGGAATGTATCATCACAGCCTTAAGAAGTGGAAACAAGGAGTGTCCAACATGTAGGAAGAAGTTGATTTCAAAACGATCTTTACGGCCAGATCCTAATTTTGACGCCCTTATTGCAAAGATTTATCCAGACAGAGATGAATATGAAGCACATCAGGAAAAAGTGCTTCAGAGATTGAACAAACATCACAACCAGCAGGCATTGACAAGTAGTATCGAAGAAGGGCTTAAACTCCAGGCCATAAACAGAGCTCAGAGAGTGAGAAAGAGATCATCCGATGACCCAGCTGGAACAGGTGGTCCAGGAACACCAGGTTCCACAGGTCAACCATCAGCAGGCGAGGGAGGGAGCAACACAGTTCGTAAGCGACAGAAGACATCATCTGATCCAGAATCAGACGCAAGTGAAAACACATTGGATTCTACTGGAGAAGCAACGGCAGAAGCCTCAGAGCCTCTAAATGAAATCGAACTGGTGTTTAAGCCACATCCAAAAGACCACGATCCAGAGACAGTGGCACAGCAAACTCGTTACATTAAAACCACAGCGAATGCATCAGTTGACCATCTTGCCAAGTATTTAGCCATGAGACTGGCCCTCGAATCACAGCAAGAAGAAACGGGAACTAATTCATCAGATCAGGGCGTGGAAGTTCAACAGTTCACCATATACATCGCCAGCACTCCTGGACAATATACGGTTCGTTATAATAATCTGAGGCGATTGTAGTGTGCGACAATTATTATAGTAGGCGAGGTTTGAGTTGAATGTCATCATAACTTAACTCTTAAAAGTAAATCCTGTGTGATTCAAGTTCCCTCTAAGTGCCAGAGTTAAAATTGACTTGATATTAAAGTAATCGTGTATTGTTGTCCTCCAGCAGCATCGAGATATATATTGAAGAAGAAATTTGTCAAGCGAGACCTTGAACTGCTTTTTAAATCTTTATTCCAAGCTTTCGCCGGCGTACAACGTCAGGGAGGCATCATCCCTCATGATGCCGTACATCAGCGGAAGTTTGGAATAAAGTTTCAAAAAGCAACTCAAGGCCTTTCGTGAACTATTTAATCTTCTGACTTGATAATGTTCACAAGTGTGTAAAAGTCAATTAGTGCTGTTGTATACTCATACGCAAAAATGTTAACTTTTGTATTTTAGCCGCTTCCTGGTTCTATGATACTGGATTATGTGAACGAGAAGGTAAGGAAGAGGTTATACCGTACAAACAATTCAAACCCTGATCCAACTTCCTTCATTTCTTAAATATTAGACAACTTTAGGCAAGAATTGATCAATTGTAGATCATAAGAGTAGAGCGATATTTTTGCCGCGAAAGTCTCGTTTTCTCGCCAACACAGGATCTTCGCCTGCAGTAAGAAACCTCCACCAGGATTTGTTCAGATCATCATGTTAGCCAGCTAACAGGGTCTCCTATTGTATGGTGTCAAACTTGTGGGTCTGGGTAACTAAAATAGCTTGTTCGCCAGTTGATGATAAACAACCGAAGAGCAAACAAATGCTTCTCTTTCTCCCTTCCCATCACTATCTTCGCGCAAAAGCAACGATAGCCCGCCACAGCCTTTTTTTTCCTCTTTCAGTATTGGAAGGTAAATAAACCACTGGAGATGTACTATGCCCTCAGCAAGCCATCATAAAGTTCAAGAAATTCCAGCCTGTTGGGATGGAAGCCCGCTGTTGTAACATAGCGCAAGCTGCTTTAAAATGTGTGATTCTTTCCTGATAAAACAAAAATGTGTTAAAAAATCGTTTCCTTGCTTTACTGATTACGTTATGTTAACGAAGATGAGCTGTCATTATGCAATAATGCAGGAAAATTGCTCTGTTAGTTTTTCTGCCTTTGCACTCATTATACAAATTTTACTTTTCTTCTTGAAATTTCTTCCATTGACGCGAGAAACGTTTTACCGAAACCATTTTAAAAACTTCTTGAGACCAAACCAAGTCCCAACTGTCGTTCTTGTTTTTAATACTGTTTTAAATTGCTCTCAAGACGAAGTTTTTAAAATAATTTCACTTTGGCCTTGTGTACGTTTCCCGATGTTGACTCCTGAAAACACAGGTTTAAAATATCCAAATTCTCCTAGTTCAAATAGTAAATGCATGGTACTATTGTCTAACCTCAGAACAGACTTTTAGAAGAAATCTTAGTTCCTCTTCGCTCCTCCATTACCAACTGAACAAATTAACACCAGGTCCTCTTGTTGATGATAAAATTGCGTTTTAACTCAGTCAAAAAGCTGCTGTGGATGCACGAACGCTGCGACTGGATCCTCAAACAACAAGTGGACTGTTAAAGTTAACTAACTACTTCCAAGGCTTAGGGTTGTTAGATTTGGATGAAGAAGGTCACGTGACACGCACTCACCCTCCAATGCCATGAATCAAAATTACTTTTCCAGTTAAGCCAGAATTTCAAAATAGCTACCCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4KLY4	E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus OX=10116 GN=Rnf2 PE=2 SV=1
Q99496	E3 ubiquitin-protein ligase RING2 OS=Homo sapiens OX=9606 GN=RNF2 PE=1 SV=1
Q9CQJ4	E3 ubiquitin-protein ligase RING2 OS=Mus musculus OX=10090 GN=Rnf2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006742 (this species only)
Ubiquitin family	ULD\|UFD\|RAWUL · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16207 all species →	RAWUL	RAWUL domain RING finger- and WD40-associated ubiquitin-like	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042741 all species →	Domain	RING1 , RING finger, HC subclass	Interproscan
IPR032443 all species →	Domain	RAWUL domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR043540 all species →	Family	E3 ubiquitin-protein ligase RING1/RING2	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46076 all species →	E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0031519 all species →	Cellular Component	PcG protein complex	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10695	RNF1_2; E3 ubiquitin-protein ligase RNF1/2	EC:2.3.2.27	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.