Gene detail

Detailed information of FUN_037826-T1 in Acropora pulchra

Genomic Location: ptg000026l:14105210...14115314
NR annotation: XP_015771668.1, PREDICTED: cyclic GMP-AMP synthase-like, partial [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_037826-T1

ATGATAAATTCAGTTTTTCAAAGGTGTAGATGTTTAGGCACGAGAGGTTTATCCACGCAAGTTGATGATCATGTAACGGGAATTACAGAAGAGCAAAAACAGCTCAGGGATACTGTAAGTAGCTTCTTTCAGAAGGAACTTACACCACATGCTGATCAAATTGACAAGGACAACACATTCCCACTGCTGAGGGAATTTTGGAAACAGCTGGGCTCTTTAGGACTCCTTGGAATAACCGCACCAGAAAATTATGGTGGCTCTGGCCTTGGTTACATGGACCATTGCATTGTGGTCGAAGAGATGAGCAGATCCTCAGGATCTATTGCCTTAAGCTATGGTGCACATTCCAATCTCTGTGTAAATCAAATCGTCAGGAATGGATCTGAAGAACAAAAGGATAAATATCTACCAAAGTTAATATCAGGTGAACACATGGGAGCATTGGCCATGAGTGAAGCTGCAGCTGGATCTGATGTTGTAGCCATGAAAATTAAAGCTCATAAAAAAGGTGATTACTATGTCCTTAATGGAACAAAGATGTGGATTACAAATGGACCTGATGCTGATGTTCTAGTGGTTTATGCTAAAACAGATTGGAACTCTCTCAAACCACAACATGGAATTACTTGTTTCCTAATTGAGAAGGGCATGGAGGGTTTCTCTACAAGCCAGAAATTAGATAAACTGGGCATGAGAGGATCCAACACTTGTGAACTTGTATTTGAGGATTGTAAAGTACCAGCTGCTAATGTCATGGGAGGGGATGGCAAAGGTGTGTATGTCCTAATGAGTGGCTTGGATCTAGAAAGACTAGTCTTGGCAGCTGGACCTGTTGGGTTAATGCAAGCATGTATTGATGTGGCATTCCCTTATGCACATGTTCGTGATGCCTTTGGGAAAAAGATTGGGGAACACCAGCTTGTCCAAGCTAAAATGGCCGACATGTACACTCGCCTGAGTGCTTGCAGAAGTTATGTGTATTCAGTAGCTCGTGCTTGTGATGCAGGGCATGTCAACACCAAGGACTGTGCTGGAGTCATTCTGTATGCTGCTGAAAATGCTACTCAAGTTGCATTGGATGCGATTCAAATTCTTGGTGGAAATGGCTACATCAATGACTACCCTACAGGGAGACTCCTAAGAGATGCTAAGTTATATGAGATTGGTGCAGGGACAAGCGAAATTCGAAGATGGTTGATAGGAGAGAAAATCAACTCAGAATTCCTAAACAGCTGTCCATTTCTTGGACAGCTAAAGTTTATTTGCTTGGTTTGCTTACTTCTTGAGATGCAACAAAAGCTTTTCTCCCGTGTTTTCCAATCTCGTTCCCAAGCCCATACTCGGATGCGAGTATACTCTCAACCTCTGGTTCTTGGAAAAAGCGGAAGCGATCCAGATATGAGTACCTGGGACGATGAAGCCTTTGAAAAATTCTGCAATAAGGCAGATTTCGACATGAACCATCCGGAAGTAAAAGAAATTGGATCGAGAATTTGGAGTTTTATCCACGAGCTCGCCGGATTCATAGGTCGGGAGGATTCCTTATTCAAAAACTTTGTGCTTCCCAGTGGAAGTTTCTACGAGGATCTTAAATCTGAAACACCAGATGAGTTTGATTTCATGATCTGTCTAGAAGATTTGTCCCAGCCTGGTGTGTGCAAGAAAAAGGAAATTCCTTTAAGACCGGTACGAGATCCAGGATACGTTGACGTTCAAGTCACATCCGAAGCTCATAAGCACCGATGGCGACGCTACATTTCTCGGCAAGGAAACCTGAAACCGGATACGTTGTTGAAAGAATTTCTGCAACTTATTGAGAAAGCTCTGACTAAAATGAAGCCTGCTGAAGGCGATAAATTGAAGTGGAACATAGACGAAACCGATGTCCATCTAAGGAAGATTCCAGTGACGATGACCCTTACTTGGAACGGGAAGAAGTACCCCAATTTTGAAATAGATATCGATTTAACTTTGTGTATTAAAATGACCGGTTGGCCTGACGCCTCAGATATAGAGAAACGTGTCAAAAGAAACGATCCCCGCTATCAAGTGATCCATAAAGTAATGAGCGAAGGGCACCATCTTGTCGCCTCGACAATCGGTGAGTCTGGTAAGAAGCGACCGTGCTGGCGTTTGTCGTTCTCAGCTGCCGAGGGTATTATACTGAAAGAAATATGTAAAGACCCAAATCTTATACACAGGAAGACTCTTAAGGTTCTCAAAGTCTTGCGAAAGAAAAACGAGGAGGACCTCTGTCTTCTTGAGCGATCAGATGGGGGCGAGTATTCCCCATTCCATCAGTCTTACATCATGATCACTTGGGCGCTCAGTTCTTATGTTTTGAAGACAATGTTTCTACAAGAATGGTTCGAGAATCCTGAAGATTCAAAATGGAGAAAAGATCAGATAAGAAAACGAGCGAGAGGTATTCTGCAAAGAGTCGAAGAAAGTGTTTCAGGAAAAGATATTCGTAGTTTCTGGATCCCAGATTACAAACTTTTTAATTTCCGAGCAAGGAACGCAACTCAAATTGGCCGTGCCAGCTCGAAGCTGTCATCAATACGACGAAGCCTAGCGGAACCAGAAAAGGAGACTTCCGAGGATGAATCCCCTGAGTCAGATCTTTCTCGTCTCTTCGGCCGAGTTAAATTAAAATAA

Transcript

FUN_037826-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JHI5	Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Ivd PE=1 SV=1
Q5RBD5	Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii OX=9601 GN=IVD PE=2 SV=1
P12007	Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Ivd PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004639 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF03281 all species →	Mab-21	Mab-21 protein nucleotidyltransferase domain	Domain	Interproscan
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF20266 all species →	Mab-21_C	Mab-21 protein HhH/H2TH-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024810 all species →	Family	MAB21L/Cyclic GMP-AMP synthase-like receptor	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR046903 all species →	Domain	Mab-21-like, nucleotidyltransferase domain	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR006089 all species →	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR034183 all species →	Family	Isovaleryl-CoA dehydrogenase	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR046906 all species →	Domain	Mab-21-like, HhH/H2TH-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43884 all species →	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006552 all species →	Biological Process	L-leucine catabolic process	Interproscan
GO:0008470 all species →	Molecular Function	3-methylbutanoyl-CoA dehydrogenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_037826-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.