Detailed information of FUN_037885-T2 in Siderastrea siderea

Genomic Location: contig_44:3141192...3148288
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006365 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00227
all species →		ProteasomeProteasome subunitDomainInterproscan
PF10584
all species →		Proteasome_A_NProteasome subunit A N-terminal signatureFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000426
all species →		DomainProteasome alpha-subunit, N-terminal domainInterproscan
IPR001353
all species →		FamilyProteasome, subunit alpha/betaInterproscan
IPR029055
all species →		Homologous_superfamilyNucleophile aminohydrolases, N-terminalInterproscan
IPR050115
all species →		FamilyProteasome subunit alphaInterproscan
IPR035144
all species →		FamilyProteasome subunit alpha 1Interproscan
IPR023332
all species →		FamilyProteasome alpha-type subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11599
all species →		PROTEASOME SUBUNIT ALPHA/BETAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0019773
all species →		Cellular Componentproteasome core complex, alpha-subunit complexInterproscan
GO:0005839
all species →		Cellular Componentproteasome core complexInterproscan
GO:0051603
all species →		Biological Processproteolysis involved in protein catabolic processInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0010498
all species →		Biological Processproteasomal protein catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02725PSMA1; 20S proteasome subunit alpha 6EC:3.4.25.1
Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_037885-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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