Gene detail

Detailed information of FUN_038078-T1 in Acropora pulchra

Genomic Location: ptg000027l:2175444...2189316
NR annotation: XP_015762509.1, PREDICTED: uncharacterized protein LOC107341581 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_038078-T1

ATGTGCACAAGAAAGATGGATTCTCGTGGACTCGTAAAAAAGCTAACAGCGGTTGAAACTTGTCTTTTCTTGGGCTTAGTTGTAGGCAGTCTATGTTTTAAAATCATCGGCGCCTCTAGACCAGGTTGCACAAATCCTCTCGGCTTGGAAGATGAGAGAGTTCAAAATTCTCAGTTAAGCTCATACACATACGATGAAGGCTGGGCTCCGTTCAATGCACGACTTAACGCAGTTGGTGCATGGTGCAGTGATACAAATGACGTCAATCATGAATTCCTGCAAATTGATCTGCTAAATGTCCAACACATATCCCGTATTGCCACACAAGGCGTGCTGAACTCACTTTGGATAAGTTACTATGTCGAAAAATTTGAAATAGAATACAGCTACGATGGAACCAAATGGTTCACTTATAAAGGCAGTGGTGGTTCCATTCAGACTTTTCATGGCAACAGTGATGCTTCCAGTGTGAAGAACAACTACTTCCGAGATACTTTTGTCACAAGATATCTCAGAATTTATCCCAAGACATTTTATCGTCACATGTGCCTGAGAGTGGAACTATATGGATGCAATGACCAGTCAGATGACTGTTCAACATATATCACAACTGCCTCTGGATCTATTAACAGCCTCAGCTTTCCTGGAAGCTACCCAGGAAATAAGGATTGCACGTGGCTTATTGAGGTTTCTAAAGACAAAAACATTGCTCTCATGTTTACACAGTTTGATGTTTACCAGGGTTCAAATCCTGGCAGCTGCAAGAATGATTATGTGGAAGTAAGAGATGGACTGACAGATTCATCACCTGTGATTGGTGGAAAACACTGCAACCAAAATAGAACAATGTTAATAACAACCAACAAGAATGTTGCAAGAATCTACTTCCACACTGGCATTGCTAATCATGGCCATAAAGGATTCCAACTTTATTTCCTGTCTGTGACGAAAGGCTCAGATGACGTGCTTAGTGGTACAGCTTGTGATGGAGAAGTATTGGCTCTAGACTGTTCAGGATATCAGAATACAATCAACATTCTCCATGCTTGGTACCAAATTGGCTCATTTCCCTTCAGTTGTGGACAACGTCATAATTATTCCAGTTCAACTTCATGTCCAGCTTTTAATGCTACGAGTGAGATTGTATCAAAATGCCAGGACTATAAAAAATGCCTCGTTACTGTGAATGAGTCTTCATTCCTTGGTCAAAGTTGTGCAAGAGTAAGGCGTCAGCTGGAAGTTTTTTATCAGTGCATCAGCACCAATGTCAAAACGCCTGCACCAACACCGCAATTGACAACAAGCACTACTTCAGCAACAACACCCTCACCCTTCACCATTAAGACGCACATGTCACACTCATTAACCAGCCATGTTACAGAGTCACCCACTAAGGTCAAAGCCACAGAGACTCCTGATGTTACACTTTCAAAGACAACGACAAAGTCAACTGACCCAATCACAGAAGTGACAAGCACCAGGACAGTTGACCCAAGAGTTGGAAGGAGGGAAGATCAGACCACTGGCAGTATGACGACTAGGACAATGGTTCTTGTTATTGTGGTGGCCGGAATTGCATTGGTCGTTGTAACGTTGCTGATAGCTCTGTTTTTGTTTCGGAAAAAAAGGCAGAGGAAAGACAAAAAGGATGCGCTTCCGGCAGTCGGATATATTCCTGGAGGCAAATACAGCAAGGCAAACAATGGCCGTGGAAGGTCCACTTTAACTTATAGTGCAAGTGGCAATGAATACGATACCACGAACATTTTGTACCAGAGTGCCGATAGCTTTAGTGACCACTCTAGCAACAAGAATGAAGATGGGAATGCCTATGCAAGTTCTGCCTTACTTGGAGGATCGATGAAAGTAACAGAGAATCCACTTTACCCAAAGGTTTCGGCTCCGTACAACAAACTTACGGCAAATGGCAAAGTGGGCTACGAGCTGGTCAAATCACCGCGTAAAGGATGTGACAGTCCTTCAAACTCACCAAAACTGCTGCCAAAGATGAACTGTATTCACAACCCGAACTACGAAAAGTCGTTACCCTTTAATCACGAATATGCTGTCCCTAAAGTTGAAAATGTTAATCCCCAAGGCAAGAAGTGTCATGTGTAA

Transcript

FUN_038078-T1

AATTTGGCTTCGTGCCGGGTCCAATAATCACATCCTCGTGATGCAAGTATTATACTGGAAGCCTATTATAAATATTCCTTTGTTTTTCTGCCGTTCTTTTCGCATGATGAGATTGAGATAACTGCAATTCTTCCATCCAAGTCTTCTCTACAGAAGCAGTCTTTTGACATCAACGATTTATTCTTCGAATTCTAAGTCGCGTATTGGAAAGCCCCTATGCGATCCCCGTCAATTCGAATCCCTCCGGTTGCTTAATACGTTCCAGATTCTGCGCATATTGTTCGATTCCACAGATCTTCGCGTTTGAATCGTTATTTGTTGATACGTCTTTACAACTTCTTCGACGCGGAAAACTCGTATCATGATCAATTAGAAGACACAGCGAAATGTGCACAAGAAAGATGGATTCTCGTGGACTCGTAAAAAAGCTAACAGCGGTTGAAACTTGTCTTTTCTTGGGCTTAGTTGTAGGCAGTCTATGTTTTAAAATCATCGGCGCCTCTAGACCAGGTTGCACAAATCCTCTCGGCTTGGAAGATGAGAGAGTTCAAAATTCTCAGTTAAGCTCATACACATACGATGAAGGCTGGGCTCCGTTCAATGCACGACTTAACGCAGTTGGTGCATGGTGCAGTGATACAAATGACGTCAATCATGAATTCCTGCAAATTGATCTGCTAAATGTCCAACACATATCCCGTATTGCCACACAAGGCGTGCTGAACTCACTTTGGATAAGTTACTATGTCGAAAAATTTGAAATAGAATACAGCTACGATGGAACCAAATGGTTCACTTATAAAGGCAGTGGTGGTTCCATTCAGACTTTTCATGGCAACAGTGATGCTTCCAGTGTGAAGAACAACTACTTCCGAGATACTTTTGTCACAAGATATCTCAGAATTTATCCCAAGACATTTTATCGTCACATGTGCCTGAGAGTGGAACTATATGGATGCAATGACCAGTCAGATGACTGTTCAACATATATCACAACTGCCTCTGGATCTATTAACAGCCTCAGCTTTCCTGGAAGCTACCCAGGAAATAAGGATTGCACGTGGCTTATTGAGGTTTCTAAAGACAAAAACATTGCTCTCATGTTTACACAGTTTGATGTTTACCAGGGTTCAAATCCTGGCAGCTGCAAGAATGATTATGTGGAAGTAAGAGATGGACTGACAGATTCATCACCTGTGATTGGTGGAAAACACTGCAACCAAAATAGAACAATGTTAATAACAACCAACAAGAATGTTGCAAGAATCTACTTCCACACTGGCATTGCTAATCATGGCCATAAAGGATTCCAACTTTATTTCCTGTCTGTGACGAAAGGCTCAGATGACGTGCTTAGTGGTACAGCTTGTGATGGAGAAGTATTGGCTCTAGACTGTTCAGGATATCAGAATACAATCAACATTCTCCATGCTTGGTACCAAATTGGCTCATTTCCCTTCAGTTGTGGACAACGTCATAATTATTCCAGTTCAACTTCATGTCCAGCTTTTAATGCTACGAGTGAGATTGTATCAAAATGCCAGGACTATAAAAAATGCCTCGTTACTGTGAATGAGTCTTCATTCCTTGGTCAAAGTTGTGCAAGAGTAAGGCGTCAGCTGGAAGTTTTTTATCAGTGCATCAGCACCAATGTCAAAACGCCTGCACCAACACCGCAATTGACAACAAGCACTACTTCAGCAACAACACCCTCACCCTTCACCATTAAGACGCACATGTCACACTCATTAACCAGCCATGTTACAGAGTCACCCACTAAGGTCAAAGCCACAGAGACTCCTGATGTTACACTTTCAAAGACAACGACAAAGTCAACTGACCCAATCACAGAAGTGACAAGCACCAGGACAGTTGACCCAAGAGTTGGAAGGAGGGAAGATCAGACCACTGGCAGTATGACGACTAGGACAATGGTTCTTGTTATTGTGGTGGCCGGAATTGCATTGGTCGTTGTAACGTTGCTGATAGCTCTGTTTTTGTTTCGGAAAAAAAGGCAGAGGAAAGACAAAAAGGATGCGCTTCCGGCAGTCGGATATATTCCTGGAGGCAAATACAGCAAGGCAAACAATGGCCGTGGAAGGTCCACTTTAACTTATAGTGCAAGTGGCAATGAATACGATACCACGAACATTTTGTACCAGAGTGCCGATAGCTTTAGTGACCACTCTAGCAACAAGAATGAAGATGGGAATGCCTATGCAAGTTCTGCCTTACTTGGAGGATCGATGAAAGTAACAGAGAATCCACTTTACCCAAAGGTTTCGGCTCCGTACAACAAACTTACGGCAAATGGCAAAGTGGGCTACGAGCTGGTCAAATCACCGCGTAAAGGATGTGACAGTCCTTCAAACTCACCAAAACTGCTGCCAAAGATGAACTGTATTCACAACCCGAACTACGAAAAGTCGTTACCCTTTAATCACGAATATGCTGTCCCTAAAGTTGAAAATGTTAATCCCCAAGGCAAGAAGTGTCATGTGTAAGGCTGTCTTGTCGTTGTCACGCGTCCTCATCAGGATCATTGAAGATTGTGTGACTACCACGTTTCACGTAACTTAAGGCAGTCACGCACTGGGTTCAATGGGGTGGGCTTTGGAAAAATATTGGGTGTGGGAAATTAAACAAGGCTCTTTCTCTTTGTTCGGTGAATCTGAATTCACAACTGTTGAGGTGAATAACTGGTTTTTAACGTCCTGTGATATTAAGTTGAGAGGCAGTTTGAACGAGAGGCTAAATGATAAAAGTCAAGGTTATAACTACACGCTTTGCATCTGCTGAATTAAAAAAAACATTTGAACGAAAACGTTCGGAAGCCACGAACGACAACCAGAAGTAGACCCTCTCGCATTTTATGCTGTAAATTTCGCCCAGATTTTAAAGCGAGGAAGTCGTTAACACAAGAGCTAGCCAAGCAAGACACTACACTAAATAATACATACACGGCGCCATGTTGAAGTGAAAATGTCTTAATAAGGCATTTTCCTTTCAACGTGGCGCCGTGGTGTCCGTAGTTGCCGCCTGTCACTTATAAAGGTTCTAAGGCTTCAAATGTGTGAAGAATATTGTGCATGTTTTCCTTTAAAAAGTAACTCGAAGCCAAAATGGTTTCAGATCTTCCTCCCTTTGTCTTTGGTCAAAGCCAAGGGAGGTCTTGAGAACGAGACTGGCAAAAAAGTGAGCTGAAGTGTGAGAATTAATTCATGTTTCTGACCAACATCTATTTTCGATGTAGCATCGTTTCCGCGTGTTCTCAGAGTGTGGTTTGGTCACGAGTTTTTACCATATTTAATTAGCTGGTTTACCTTTTAGTGAACGAGAAAAAAAAAACTTGCTCTCGTATTCAGACAATTAACCTTCAGACCTTCTATGGTTTCCAAATATTTGTTTTCGTTTCATGTTTTTTTTTTATCCCGAGTTTCGACGTTGACAAGATCGAATTCCAAGAAATTTTGGAGCAGTTTGTGTGCTTTTCTGAAGGAGAGGGCTGAATTGTCAAGGGGTCAATTTGATTTTAAGCTGACTTCACAGTTGGTTCTTGGTGTTGGCCAATCAGCAGATTGGGAGTTGTGAATTCGTTTTTATTGAAAGGATGTAAATTTTTTACCGTGATCTTTCCCTAGAAGAGAAATATTATTTGATGAAGGTTTTAAACCAAATGAAGGGAAGGTTGAGCATTATCTTGGAAACAACCGTTGGTGTGAATATAAATGGCTTTTGACATTTGACAGGAACATAATTAGTTATTTAAAAGGTGAACTAATTTATTGTGGAAGATGTAAGAAGTGTATTTGTAAAATAGAATATTTGACCATATAAAGTATGTAAGTTTGTACCTAAGAACACGAGTCATTGAATTTGTTAAGATAAACGCGATTTAATTCTTCGTTCAGTTATTAAAATATGTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88783	Coagulation factor V OS=Mus musculus OX=10090 GN=F5 PE=1 SV=1
P12259	Coagulation factor V OS=Homo sapiens OX=9606 GN=F5 PE=1 SV=4
P21956	Lactadherin OS=Mus musculus OX=10090 GN=Mfge8 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004226 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02140 all species →	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000922 all species →	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR043159 all species →	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR050633 all species →	Family	Neuropilin/Multicopper Oxidase/Coagulation Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46806 all species →	F5/8 TYPE C DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0017154 all species →	Molecular Function	semaphorin receptor activity	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0098978 all species →	Cellular Component	glutamatergic synapse	Interproscan
GO:0099055 all species →	Cellular Component	obsolete integral component of postsynaptic membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_038078-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.