Gene detail

Detailed information of FUN_038280-T1 in Acropora pulchra

Genomic Location: ptg000027l:5239737...5254025
NR annotation: XP_029189708.2, LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase MGRN1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_038280-T1

CAACAACTTCCCAATCCATCACAGATTGTGAACTGTGGCAATTTTGGGAAAAATGTAGAGAGTTTATCTCGCATTTTCTCAGCTGATCTCATCAACAATGGGCAATCGGTTCAGCAGACAGAATGAGGGAGTCGAGGATCTCGAAGCAACTTCAAATCCGTACAGATATCCCCAACTGTTAGGAAAGAACTTTTTTGCCGATTACTTCCTAATGGGTGGATCGAGATTTGAAACCCCCGGGCCCGATGCGTATCTCTTTGGGGAGAATGCAGATTTAAATCTTCTAAACCCGAAGCCAGTTTCGTTTCCTTATCCTCAGTCTCCAGGCAATGAACCAACAAAAACCCTTCGAAGCCTTGTAAACTTGAGGAAAGATTCCCTTAAACTTGTGAAAAGCTCAGACCACAAGAGTTATTTTATCGAGTTTGTGTTTGATGCTGATGTGAAATGTTCTGTAACAATTCATTACAAGGCAACTGAAGATTTGTCTACTGGCTTGGCCATTTACACATCAAGAGAACCTTTTACATCATCACCAAAGTCATATTTTTCAAAAGGCTCAGGGCAAGTTTATAACAGCTCAGCCAAGCACAGAATTCGGCCGAGTTTATTTGAAGATGGCGAGCTGGAGTTTTGTCCCTTGAAAAGCTCCTTCTTCCCTGTAGTTGTCCAGATTGATGTCAATGACGAAGATTATTTGGGACATTCCAACATCACTTTGGCAACATTTGAGAAAATGTGCGATGGATCATACACAATCAAACCCATAAAGCAGAAACAAATGGTTGATGGCCTATGCTATCTACTTCAAGAAATTTATGGAATTGAAAATAAAGTGAATCAAAAAAGCGTAAAGGAAGAAGAATATGATTTAGAGGAGACAGGCTTAGAGTGTGTCATCTGTATGAGCGATATGAGGGACACACTCATTTTACCCTGCAGACATTTATGTTTATGTCGAGAGTGTGCGGAAAGTCTGAGGTATCAAGCGAATAACTGTCCCATTTGTCGATCTCCATTTCATGCCCTTCTTCAAATTCGCGCTTTTGTCAAGAAAGATGGGAACTCTCGCTCACAGGGCAATGAAAACGATGAAGACACATGGCCAGGCTATGAAGAAATGCCTCTGGTAGAAGCATTGAATGGCACAATCAGACCAGATGATATACCACAAGAAGCGATTGCGCGGATGCGTCGAAGATCTGCGTCAAGCATTCGCTCTTCCGGTAGAAGGCGAATTGACAGTGCTCGTAGTCAGCGGTGCGTTGAACGTTCATTGTCCGCATGCTCGGGAATGTCACGACCTTCCACGGCTGCTGGAAGAAGCCGGTTGGAGCGTGCGTCATCTGCCACTGATCGTCGCTTGGAGTCTAGGGAAGCTTTTTCGCAAGGCGAAGCAAGAGGAGACACGGAAAATGCAGCTGTTGATTTCTTACCGCGGAGAGACGCAGAAATCGAGGAATTAAAAAACAGCCGAAGACTTGAAGAGTTGACCTCAGCTCACAGCGAGGAAGGAGCTACAGCCCCAGTCTTGTCAAGTCCCAAAACTCAAGAGGACGATTCACAAGACAATCAAGTTCATGTGGACGTGTCATTACCAGGGACGCCGCTGAGCAGTGATTTAAGTGGGCGCAGTAGTCGCAGCGCGGGAAGTATTACAGCAACCACGCCAACCTACGTCCGTTTAGAAGAGACTACAGGAGAAGCCACTGTCCACATTGTATCAACATAATTCCGGCAATTATTTTTTTTTATTTCAGAGGTGGGCGGAGTTTTCGCTTACCAACACTGCTAATATTATTCGTAAAATCACATGGCTCCAGTAAATTTTCCAATTTGTCTTCGCTCAGTTAAGCTAAAGAAAAAATGACTTGCAGAAAATGCTCTAATAATTTTCGACGCAAACGACTGCACTCACGCGAGCAAACATTTTGTTACCTACAATTTTTCTTTTGAGGGGAAGACATGACTATAAATGTCGATTCCCATTCCCTTTGAATCTAATGCGGTGTTTGAGAGCCTGGAACAGATTACAATTCTTGGCTTGTGTAACGCATTGTACATAAATTTGCGCACTTGACGGAAGACCAAGTTTTGATACAAATCACCCTTGGTGACAATTTTCTTTTTCAATTGGTAGGCACATGTTTGCATAAAAACATATCGATAGTTTCGGATAAATTAAAATCTGACCACGTTTCGAGAAAGTTCGGGACACGTAAACGCGGCTCAGCGTTTTTGTGTGTTATTTATGTTCTGCATTTATTACAGTCTCGCTACCAAGTGATTGAAAGAATTGTAGTGTAGAGAATAATGTAGAGAAAAGGGCCTGTCAGAAACAGCAGACAGGAGTAAACTTCTGCATTTGAGTAATCTGTGTAGCAAGGCCAGATAAACATAAGCCTGATTCTCAGACGGTCCAGGTCGCTCGCGGTCACGCACTCTCTCCCTTCCCTGTCTGATGGACTTCATTCAAGGTCATGTTTGTGACGTCATGACGCCGTTGTTCTTTCCGCCAATCAGATCGAATGTAACATTCTCAGAAATCAGAAGAATAGAGAATTTTTTCAGAAAATTTTTTCAGAGAATAGCTTACAGTATCTCGCGCGTAAATGTCACTTTTGTCCATTTCTTAGGAGCGTGACATTAGGTAGTACTTAGTCTAAGGTACAGTTGTATGTCCCTCGTGAACTGGTAACCGATAGAGATCACAATTGTATCAACTTTATTTTTACAACTGACGTAATCAGTTCTATAGCTCCACTAGAAATTACTTTTTAATTTGTTGTTTTGTCTTTATGATGTATCTCTAGTGTTTGGTCACTACGCGCTACAATCAGGACAACGGTGTAGAGACTTCTCGGGAAGATAAGCCATGTTTAGCGTAAAGGCTAAATGCATTGTGCGCACATTTTACACTAACCAAGTAATGTAGTCATCACCGTACGTACACGCATATTCTGTTTTTTTTTGCAATGCTCATGATAAGCCTTTCTAACCTCGCTATCATTTGCAAAATGCGAAAGTATATTTTATCTAAAGTGAGGCCAGTAGGTGTCATTCGCATAAGTGCAAAGGAATAACAAATACGCGGCCATTTATAAGGGGTCTATTCCTATTTAGCAAAGCAAAGCCGACCCTTACTCTCCTGGCTATTTGAAAACTCCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XIQ4	E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus OX=10116 GN=Mgrn1 PE=1 SV=1
Q3TEL6	E3 ubiquitin ligase Rnf157 OS=Mus musculus OX=10090 GN=Rnf157 PE=1 SV=2
Q96PX1	E3 ubiquitin ligase RNF157 OS=Homo sapiens OX=9606 GN=RNF157 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006794 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045195 all species →	Domain	LOG2-like, modified RING finger, C3HC5-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR045194 all species →	Family	E3 ubiquitin-protein ligase MGRN1/RNF157-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22996 all species →	MAHOGUNIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25192	RNF157; E3 ubiquitin-protein ligase RNF157	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.