Gene detail

Detailed information of FUN_038286-T1 in Acropora pulchra

Genomic Location: ptg000027l:5298832...5309624
NR annotation: XP_029189732.2, uncharacterized protein LOC114956706 isoform X2 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_038286-T1

ATGGAAAGGCAGAACCGAATCCAAGGAGGGCAATCGTCTGTGGGTTTGCTGCCAAGAAAGATTTCTACAATAAGCAAAATTGATAAAGATGACAAGTCAGCTGGTGAAGAAAGCGATTCAAGTGATGACGACACAGGTGCTGAACGCTTCTATCACAACAAAAACCAGATTTTTTTCAACAAGAGTTGCTGTTTTGGTCCCCTGTTGGACCCTGACAAGGTTTCACAGCTGCCCGAGGCCACCCCTCCAGGAAAGGTCAGCAGTGTCATACGCACGGGACTGGAGATGGTGGCCAAAGCGGCATTTGATCCGGAGAAAGTCATTGATCTGATGCAGGAGGGATGTGGGGTGAGGGTTGTGGTCAAACACCAGGGAAAGACCTTAAAGAAGGCAATCTCGCGCGTGGATTCGAGACCAAAGCTTGAGCGTTATCTTAAGAGATTCTGTCGGCGTCTCATATGTTGTGAATTCTTCTTGAGTCTCAAACCGGTGCCTACGCCTTGTCCTGACCAATGTCAAGCCGATGATCAAGGAAATTTGCAAGGTCCCAAAGGACTCAAGGCTAAAAGATCACGCGAGTACTTTGAAGTCAAGCATCTTGGAGTCGAGAAGAAGAAGAGAGGCCGGAAACGGAAGTCCGAGTACATTCTTCCGGCGGAGCCAAACAGTATCATTACCAGGCCTCTGGTGGATAATGGTATATCCCTACCAGGGGCGGTCTTCACTGTTGTTGAAGGGCAAACGATATCGGCAACGGTAGCAACTATTGCACCTGTACAGAATGGATCCTCTGGCGCTCAACCTCAAGGGGCTCCGGTAGTGCCCCCTCCGGCGGTGGTACCTCTGGGGTCCGTTAGTTTAGGACCACCGGGTTATCAAGGCCCTCCCAAGGCATCAGTTCCTCGTCCAATCAACCCGGTAAAACCCGTTCCCATGCTTGCTCCTCAAGGGAAACTTCCCATGGTTCAATCCCACCGGGCTCCTGTACCGATCAACGCTTTGCCAGGAGGGAAACCAGTCATGAAGGAGGGCGTCCAGCCTCACAATGCCCCCAGTGCGCCAAATGTCACACTGACGGACGGTTCCAGTCGTATTGTGACCAACGTGTCCAGCCAGAGATTTGAAACCAGCGCTACCAGCTCAGGTACCACCATCACCTTTGGTCGAGCCCCGCCCAACGTGACCATCTCAAACTGCGTTCCTCCACCGCTGACTAAGATAGCCTCTGACGGAAGGAGCAGTCACGTGACAACGACGACCAGTGTGATGGTCGACCAGCCGAATCAGCTGTCAGTTCACGCTGCGTCCACAGTCCAGACGGCCAGTAGTACTTCTACCCCTCCCCCTTACCCTTCGACCGGTTCTCCGCACGCTCCTCCGATGGTCAGACCGTCTTACAGCCCGGTCACTGTTGGACAAGTGCCTGCGTACAGACCAGTGACAAGTCCGCCCGTGTATGCCCGACAGGTCGTAAATTCGGGTCCCCGAGGAGTGATTCGCCATCCTGGAGTTCATCCTAATTCCTCGTCGAGCCAGTCGGTCATACAAGTCAAACCGAGCTCCGGAGCAGCTCCTCCCCCTCCTCCCCTAGTTTCGAATCCTCGTGTACCCCAGAAGGCATTACGTCCGCAGGGACTGTACGTGCCTCCTCAAAGCAGCAGTTCAACGTCTGCGTCACGTGCGCGACCACCGCTGCCTTCACATCCAACCTCATATGGTCCTTTACAGGTCCGAACTGGGGTAATAAACCATCGCCCTCAAGGGAATGCCCCTCCTCCTCTCAGCAGCGCCGCTGTTGCACCCAACACACACACTCAAGCTGGTACAGGAGAAAAGACACCTTCCCAGCCCGGTGCGCCTCACACTCAGAGGCCCATAATACCAAACTACCACGGAATTCCTCGATCGATGAATTTGCCGAGAAACTCTGCTCCTTTAAGTTTCTGCAATGTCAGGACTTCCATTGCGGGCGGATTCGGTCGGCAACTTCCTCCACAAATACGTCCGCAGGGGACTTCCCCAGGGCCACTGCAACAGAGTTTCAAGCTGCGCTTTACAGCTCCTTCAGTGTCAGGAACCGTACAGCAGCGCAATGTTGAGTCCAAAGCTCCTGTCACTTTCGTAGATTCAACCCTAGTGCCAAAATCACGCGTTGGACCTACACCCATCAAACCCAAGACATCTATTGAACACCTGCAGGCCTTGACGAATGCCACCAACCAAGCTGTGGTCAATGAAGAGCCGAAAGCCAAGGCGGAACAAGGCAAGGCTGTCGAAGAAGGAGAAGACGGCGAAAGTGAAGAGAAGTCGGGATCTCCTCCGAAGAGGAACTTGTGGTGGTTGAAAAAGAAGCGAAGGAAGCGCTCGCGGTTAACGTACATCAAAACGAAGTACCGCCGGAAAGATGATGAAGGGGTGCCGAGTTCTTCCGAAGTGGCTCCGATAGAGATGGAGCTCGAAGACGACGTTGAACTCGACTTGGAAGATGGTCTTCCGATCTCTCCTACTGGAGAAAAGCCCAAGCGAGGCCGGCCACCGAAGGGAATCGGCTTCCGATTTAAGGGCGAAAGCCTCTCGAACAGTGATCCCGATTGGGACGAGACCGAAGAAAGGAGACGGGTGAAAACTGTTGTCAAGAAGAAAAAGGGACGAGTCAAGAGAGAGTCAACAGAAGTTTTGTCACCTAAACAAAAATCTCCGAGCCTCGAAGGTGTCTCGCAGATGGCAGGCTTTTCCGGTCTGAATATGGTGCGGGAGCCTGGGAAGAGTCCTTACGGTGACCCCTCATCCATGGTGCGCTCGCCTCCGGTTTCTCCGCGGACAATGCATCGTGCTCACACGGTTCGCATGTTGGGCGTGGCAGGTGATAAGCGCATGATATCCCCTAAGGGGTCCTCTTCTAAAATGATGCGCATGAACTCTGGACCAGAGAGCAAAGGTCATCATTCTGCATCGCGATTCCCGCCCTACCCCAGCTCTCCTTCGTCTGCTATAGGCTCCTCCGGTCAGCGTTCCATTCGTCCTAAGCCATTCTGTGTAGACGTCGGTACCAACACGTCACTTCCGGGCTGCGTGAATGGGAGGTCCCCTGACCTTCCCGCTAACCCTGTGACGTGGTCAGTGGAGCAGGTAGTCAGATATGTGCGTTCCACCGACTGCATAAATTATGCAAACATATTCTTAGACCAGGAGATTGACGGCAAAGCCTTGATGCTGTTGTCACGTGATTCTCTAATGCAATTCACTCGGATGAAACTGGGACCGACTCTGAAAATGTGTAGCTACATCGCTCAACTCAAACTTCGCGCCCGTTGA

Transcript

FUN_038286-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JMD1	Scm-like with four MBT domains protein 1 OS=Mus musculus OX=10090 GN=Sfmbt1 PE=1 SV=1
Q9JMD2	Scm-like with four MBT domains protein 1 OS=Rattus norvegicus OX=10116 GN=Sfmbt1 PE=1 SV=2
Q9UHJ3	Scm-like with four MBT domains protein 1 OS=Homo sapiens OX=9606 GN=SFMBT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004967 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF12140 all species →	SLED	SLED domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038348 all species →	Homologous_superfamily	SLED domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR050548 all species →	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR021987 all species →	Domain	SLED domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247 all species →	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_038286-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.