Detailed information of FUN_038338-T1 in Siderastrea siderea

Genomic Location: contig_45:3998854...4004520
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03321
all species →		GH3GH3 auxin-responsive promoterFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004993
all species →		FamilyGH3 familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31901
all species →		GH3 DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0016881
all species →		Molecular Functionacid-amino acid ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_038338-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_038338-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
75TPM > 0
7Conditions
1,380.1Max TPM
391.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 17 381.39 1,050.10
holobiont · low.pH Control.temp 20 18 570.01 975.20
holobiont · control.pH_high.temp 20 17 342.66 1,329.70
holobiont · control.pH Control.temp 19 17 387.30 1,380.12
Whole organism 4 4 9.19 20.94
unannotated 1 1 12.46 12.46
live coral tissue/skeleton 1 1 6.26 6.26

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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