Gene detail

Detailed information of FUN_038373-T1 in Acropora pulchra

Genomic Location: ptg000027l:6336177...6344531
NR annotation: XP_015750987.1, PREDICTED: mitochondrial dicarboxylate carrier-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_038373-T1

TAGATTGAAGTCAGATTTTCGACCCCATGCGGTATCTCAGACCTGTCACTTGAACACGGGGAACATGTCCGTTAGTTTTAAAGAGGGAGCTAGCCAAGGCTCTGCACAAACTATGAAAACCACGCCTAAAAAACACAGATGGTATCTTGGGGGTATCGCTTCTGCCATGGCGGCGTGCTGCACCCATCCATTGGATCTTCTTAAGGTTCATTTACAAACACAACAGCAAGCTACTCATAACCTTACATCCATGGGAATTCATGTTGTCCGTACGCAGGGTGTGTTAGCACTTTATAATGGACTTTCAGCCTCCGTAATGAGACAGTTAACATATTCCACAACACGCTATGGCTTATATGAAGTGGTAACAGCAGAGCTAAAGAAAACTAATGATCCAATACCCTTTTACCAGAAAATTGCTGTGGCAGCTGCAGCAGGTTTTGTGGGAGGAATTGTTGGAAACCCTGCAGATATGGTAAATGTAAGGATGCAAAATGATGTGAAAATGCTTGACTTGGCAAAAAGAAGAAACTACAACCACGTATTTGATGGTCTCTATCGAACAGCAACAGAAGAGGGTGTGAGCACATGGATGAGAGGTGTGACTATGACATCATCAAGGGCTCTTCTCATGACAGTGGCTCAGATAGCCTGCTATGACCAAGCAAAGCAGTTCTTACTTACAACAAGGTTTTTCAAGGACAATATCATCACACATTTTACAGCGAGTTTCATAGCGGGTACAATTGCTACTAGCATTACACAGCCAGTTGATGTAATGAAAACAAGACTGATGGAGGCAAAACCTGGACAATATAAGAGTGTAGCCCATTGTATTCTTTATACAGCAAAACTTGGACCTCTTGGATTTTATAAGGGTTTTATTCCAGCTTGGGTTCGCTTAGCACCTCACACAATCCTCACATGGATTTTTCTGGAGCAGCTGAGGGTTTTCTTCCCAATAAAGCAGTAATAGTAATTCTCAAAGTATTAACTATGATTAGATTTTGTTTAGTAATAAAAGAAAGAGTTATTTATTTGAAAATTTAATTAAATGGAGTACATAATATTGTTTTAATTCCCAAAGGTGGAGGTAGGGGAAATAGCAGCATCTGCTACTCTCATTAGTCTGAAAGGAGTCCTATCTTTGCCACCAAGTCTAAGAACAAGGTGAAAATAAAAACAGGTGTTATGAGAAAATGTCTGCTCAAAATCTAGATTTTGCATTGTTATTTTTTAAGATGGAATCAAATGGCGAAGGAGGAGTTGCTTGTAATCCAAGTTTAACCAACACTTGGGCAAAATTTATAATAATAATAATAATAATAATAATAATAATAATAATAACAGCAAGTTATTGTTGAAGGGTTTATCCCTTCAAACTGATTACTCTCCCGCAAAGCAATTTGATTGTGCAAAAGGAACAATTGAGTTGTGTGATAATGCACTGTGCAATGACATTGAAATTCTGAAGAATGACTGTTAATTTTCTGTTCAGATTGGCATCAGTTCATAAATTACTTTTAGTAAGAATCCTCAGAAAGGTGTGATTAAGTTGTAGTATTAATAATTATTATTATTGAGATGATAATTGCGTTTAAGTGTTGTAATACAGTTTTTCATATCCTGAGTAATACATGTTTATGCAACGTCAGTGGCAAAAAGTCAGTGGTTTAATAAAGTGGTCGCCGTGCAACGTAATTTTATTAATTATTTAACAAATAAATAAGCCTAAGCCGTGTATTACACTGTGATAAAACACGACGTACATGCGGCTCGTGTTTTCTACATTTTTCCAGTGCACGTGTTCTCAAAATTAATGTCCAGACTGTTTTATCACACTTTATTATATGGCCCTGTCTCACAAGGTCTGGGAACTACCAAATTCACGAATTTGATTGACTGAAACGGATATTGACCGCGGTCTAGATTTTCCCATCTAGACCGGCAATGTTTCGAAGTGAAAAAGTCGCAAACTAAAATGCAAAATCATTGACTGTTTTCATCTAACAATATGTATTTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBX3	Mitochondrial dicarboxylate carrier OS=Homo sapiens OX=9606 GN=SLC25A10 PE=1 SV=2
O89035	Mitochondrial dicarboxylate carrier OS=Rattus norvegicus OX=10116 GN=Slc25a10 PE=2 SV=1
G5EE96	Mitochondrial dicarboxylate carrier OS=Caenorhabditis elegans OX=6239 GN=slc-25a10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001412 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR050391 all species →	Family	Mitochondrial Metabolite Transporter	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45618 all species →	MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008272 all species →	Biological Process	obsolete sulfate transport	Interproscan
GO:0015116 all species →	Molecular Function	sulfate transmembrane transporter activity	Interproscan
GO:0015117 all species →	Molecular Function	thiosulfate transmembrane transporter activity	Interproscan
GO:0015131 all species →	Molecular Function	oxaloacetate transmembrane transporter activity	Interproscan
GO:0015140 all species →	Molecular Function	malate transmembrane transporter activity	Interproscan
GO:0015141 all species →	Molecular Function	succinate transmembrane transporter activity	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0015709 all species →	Biological Process	thiosulfate transport	Interproscan
GO:0015729 all species →	Biological Process	oxaloacetate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0035435 all species →	Biological Process	phosphate ion transmembrane transport	Interproscan
GO:0071422 all species →	Biological Process	succinate transmembrane transport	Interproscan
GO:0071423 all species →	Biological Process	malate transmembrane transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13577	SLC25A10, DIC; solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora pulchra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora pulchra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →