Gene detail

Detailed information of FUN_038502-T1 in Acropora pulchra

Genomic Location: ptg000027l:8071249...8088673
NR annotation: XP_029191709.2, rab11 family-interacting protein 3-like isoform X2 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_038502-T1

ATGGCGAAACATCACCCAGACTTGATCATGTGCAGAAAACAACCAGGTGTTGCCATTGGAAGATTGTGCGAGAAATGTGATGGTAAATGTGTTATCTGTGACTCATATGTTCGTCCTTGCACACTGGTGCGGATATGCGATGAATGCAATTATGGTTCATACCAAGGTCGCTGCGTGATTTGTGGTGGCCCTGGTGTCTCTGATGCATACTACTGCAAGGAATGTACGGTACAAGAGAAAGATAGAGATGGGTGTCCGAAGATTGTCAACTTGGGAAGTTCAAAGACAGATCTCTTTTATGAAAGAAAGAAAAAATGGTACCATTATAACCTTGATGAGGCCTCCCAGTTAAAGATCAAGAGAGAGGACATTTACAGTATGCAAGACGGAAATGTGGAAGATGTCCTAGGTGAGTTGAAAGCTGTGTTTGAAGTGTGCGACCAAAATGGCGATGGCTTCGTGAAAACACAGGATCTTCTGCGGCTTGGCCAAGAACACGTCAGTGAAGGCTTTGAGGAGATGAAAACCTTGATAGAGAAGTTGGATCCCGAGGGATTCGGACAAATTAGCTTTGACAGATTTTGTAGCGGAATCCACGATTTCCTAGGGGTCAATGGTGATCTGAATTCGAATGGCGGAAAAGAAGCTAACAAATTTTCCGCTGATGAGCAATATCCACGACTCACGATATCTGCTAATAACGACCATTTCGAGGACAGTTGTTGTGAGCGGGATAGTACATATAGCACGGCATCAACAAATGAGTATAATGGTGATGATGATGATGATAACTTCCAGGATGAGCTCAACATATCCAATTTCAGCCGTAATCAAAAGCAATATTCCACATTTCCACCTCCAACTTTGCCTCGATTGAAATATCGGTCCACTTTACCTGTCACAAGCACAGAGATTTACAGTGACAGACATTCAGACACCAGTGAATATCAGTCTGAGGAAGGCTTTGAAGGTTTCGGGGAAAGCTTTAGTGAGGACACAGCATTCGAGGATAGTCCACGCATCAGGCATGATAATCGCCTTGCAGATCGCTTACTGAGAGGGAGAACGTCGGCTGCTGCAGCTGCATTTTCAAGTCAAAATGGCCACCACATGAACCTCTTTAAATGTCACTCTGAAAATCCAAGTCGACAAAACAGTTTTGAAGATTTGATCATCGATAGAGCAATGTCCGACAGTGAAGCGGGGACATCCGTGTTTCTCATCACTGAGCTAAAAAGGTTATCATCACAAGTATCATTATTACAGGAAGACCACGTCATGCAGCAAGGAAAACAGCAAAAAATTCGCGATGAAAACAAATTACTCAGTACAAGAATCAATGCCTTAGAAGAACAGCTTGAGACACAGAAACTCTCTACAGGAAAGCAAGTTGAAGAGGAAGGCTTAAAATATAAAGTAGCTTTGACTAAATTAGAGAGAGAGAATGAAGATTCCTTAATTGCACTCAACAAAAAACTTCAACAAGCTGAAGAGGAGATTGAAAAATTAAAAAAGGTGGAGCCTCTTTTAAGAAAAGAACTTGACACATGTCAAGAGGAAAAGAGAAGGCTTCTAAACCAAGTTGATAGTCTTGAGCTTGCACTTCAATTAAAAGCTGATGAGGTGAAGGAGCTCAAAGCAAAGCTAAATGCTGAAATAAAAGGACGATTACAAGATCAGCAACAGCATGAGCAGGATCTTGCAGTGGCTAGTGAGCATTTGTCAGAATTGGAGAGATATAAACTTGAAGTAGAAATAAAACTTAAAGACCATCGTAATATGGAACAACAAAAAACTGACCTGGAGAGGCATGTTCAGGCTCTTATCAAGGAAAACTTAGGCTTGAAAAATTCTAAAGAGGAACTCAATGTTCAGTTACACCAGGATGGTTATTTCGGTGCCACTCAGCAAGGATCACTGGCAGATGAACTTGTCACAGCGGACAAAGAAAAAATCATTAACACACTAAGAGAACAAGAGGAGGAAAACAGAAGACTGCGAGGGTACCTGGATGGATTACTCATGATGATTATGGAGCATAATCCTTCTCTACTTGAACTTCAGTGA

Transcript

FUN_038502-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7RTV0	PHD finger-like domain-containing protein 5A OS=Homo sapiens OX=9606 GN=PHF5A PE=1 SV=1
P83870	PHD finger-like domain-containing protein 5A OS=Mus musculus OX=10090 GN=Phf5a PE=1 SV=1
P83871	PHD finger-like domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Phf5a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004490 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF09457 all species →	RBD-FIP	FIP domain	Motif	Interproscan
PF03660 all species →	PHF5	PHF5-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051977 all species →	Family	Rab11-interacting regulator of endocytosis and ciliogenesis	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR037245 all species →	Homologous_superfamily	FIP-RBD, C-terminal domain superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR019018 all species →	Domain	Rab-binding domain FIP-RBD	Interproscan
IPR005345 all species →	Family	PHF5-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15726 all species →	RAB11-FAMILY INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan
GO:0032154 all species →	Cellular Component	cleavage furrow	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0032465 all species →	Biological Process	regulation of cytokinesis	Interproscan
GO:0055038 all species →	Cellular Component	recycling endosome membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_038502-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.