Gene detail

Detailed information of FUN_038530-T1 in Dendrogyra cylindrus

Genomic Location: contig_185:319650...322423
NR annotation: XP_020625212.1, neuronal PAS domain-containing protein 2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_038530-T1

ATGTCCAGAGAAGCGAAATTACCACAGGGAAAAATCCAGCCCTCTAAACAAGTACAAGACGACGAAGAATATGAAAGCAAGCGGATCGATCGCAATCAATCCGAAAAGAAACGGCGTAATAGGTTCAATGGACTTATCGACGAACTCGCGGCTTTAATGGCCGAGAGAtgtgaaacaagaaaaaataggGAGAAGAGCTCCATTCTGAAACTGACCGGGGAATATTTTCTTGAGCAGGAAAAGTTAGCGGCCGAGAAGGTTAGGAATGAAGTATTTCGAAATGTGAGGCCTGCTTTCGTGACGGATGATGAATTGGACTTCGTATATCTGGAATCTCTGAATATGTTAATATTCGCTTTGgaccaaacaggaaagattGTTTATATCTCGGACAATGCACACTCGACCTTAGGGCATTTACCTGGTCACTTATTACAGCGTAGCGTGTTTGAATTTACCCTCACACGGGACCATTTTGTTTTCCAGGGAATGCTGTCGGTTTTGAAAGACAAAGCGATCATTTGTACGTCTGCGTCCGCACGTGAAAACCTTGCCCAACGCTTTCAACCGTTTTGGTGTCAATTTCGACGAGGTCCATACGGCCAAGGCAACGACTTTGAAACAATCTGCTGCTTTGGAACAATATTAAGAAATTTATCGAGGGAAACAAATGAAAATCTCGAAATTTCCGAATGCATAATTATGCTAGCAAGACCTTTGAATAGTGTTCCAGTTGAAAAGATCCTTCTGAAAGCCGATGGTCCGCAAACGAATTTTACGGCAACGTTGAATATGGAAGCGAAATACCAGTACTTGGACAAACGGGTAGCCTCGGTTCTCGGCTTTTTTCCTTCGGAAATAATTGGAAGTTCGTTGTTCGAATTCTGCCATGTCGATGACCTGGACAATTTGGTGGAATACCATAAAATGTTGCTTCTAAAGGGAAGAATAACAACATGTTTTTACCGGCATCTTACAAAAGGACAATCATGGATTTGGCTTCGATCTCGCTATGATCTATCTTACAGCGACTGGGACTCAAAACCTCAAGCGCTGACCTGTTTATCATGGGTTGTTCCTTACACTGAAGTTTGCGCAAAACAGGCAGAAATATTGACGCGCGACAAAGAAAGCTTTACGCAGATTAGAAATGTTACCAACAGGAGAAAAGATGGAAAATCGAATTCTTCCAAGTCTTCTAACAGCCCGAGGTTAAATGCGCCAGCGGAAATTGAAGAGAAGATTCAATCTCGAAGAAGGAGCTTTGAAAATTCCATTCAAAGCGAAACACAAGACTTGTCGGTGGCTCGGACTCCTGAATCTGAGGAAACCCAGAGCAACTGCACATCGAATATTCCGTACACAATCGAGCTGGATGAAAGTTTTCAGTTTCTAAAGAGCCTTAATTTACCTCTAGACCTAACGGGTGCCCAGCAATCTCTTCACCAGTTTCTGCAAGATAAGTACATTCTAGTTATAGAGGCAATGCACAAGCAGACAAGAGAACTCAACGTAATTCAAAAGCAGATTAAGATTCAAGGAGAGATCCGCGACCTGATGGACCGACTAGAAAAGGAAAGGTCTTCAAACGATATCAACAACGAACGCAACATAACCCGAGAAATGCTTACAAAGTTTAAAGAAATGCAACGGGCTTGTTTGGGCTGGCAAGCTGAAAAACCAACAGCCGAAAGTGTAGCTATTTGCTCCAAGCGACTACAAGAAATTGACGTCCAAAGTCATTCATCCGCCGTCACTTCAGAAGAAAACCAACCGATGACCAGCGAAGTAGACGAACCAAGTTATTCACCAATGGAAGTGGAACCACCCAAGCCCACACAACCGCAATCAGATATTTTCTTTAATCAAGAGCGCTGGCTTCAAGCACAAGCTCATCAGGCACAACTGGAGAGGCAAGCGCTACTTGTGCAACCAATGCTCAACACGCAATATTTCCCGCAGGAACAAATGATGGTGAATCAGCAACAGCAAATGCTCGCTCAGCAGTTAGAACAAAGGCAATTGGATGAAGAAATTCAACAAATATCACAGCAACAACGCCAGGAACTTGTTTCGCAGAACATAAATCCTTCCCACGCCGCGCCTCCTCAGGAAATATTAACCACGGCAAACGAATCGTCATTTACAAACGATTTACAGCAAAATTTTCCTTCTAATTTTACCTCAGTTTCTCCTTACAGTGCAGATGAATCTTTGTATGAATATCAGTGGTTTTAG

Transcript

FUN_038530-T1

Protein

Uniprot

Gene family

Uniprot term	Description
Q91YA8	Circadian locomoter output cycles protein kaput OS=Spalax judaei OX=134510 GN=Clock PE=2 SV=1
Q8QGQ6	Circadian locomoter output cycles protein kaput OS=Gallus gallus OX=9031 GN=CLOCK PE=1 SV=2
O15516	Circadian locomoter output cycles protein kaput OS=Homo sapiens OX=9606 GN=CLOCK PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF08447	PAS_3	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047230	Family	Circadian locomoter output cycles protein kaput-like	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR000014	Domain	PAS domain	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR013655	Domain	PAS fold-3	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46055	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032922	Biological Process	circadian regulation of gene expression	Interproscan
GO:1990513	Cellular Component	CLOCK-BMAL transcription complex	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09026	NPAS2; neuronal PAS domain-containing protein 2	-	Transcription factors	ko03000	deepkoala