Gene detail

Detailed information of FUN_038535-T1 in Acropora pulchra

Genomic Location: ptg000027l:8467594...8475108
NR annotation: XP_029191759.2, sphingosine kinase 2-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_038535-T1

CGCACGTAAAGCCAGTTAAAGTTTACGTTCGTACGCACGTAAAAATTACGCGACAGTGGAAATCCACCTTAAGTTTTAGCGGGGATCACACTCCATAGTCCACACCATAGGCTATGAGCCCTGCAAAGAATGTTTCCGCTGACCGGTGAACTCAAGAAGCCGGATTCGCCGAATTATGCAAACATTTTGCTTTTAAAAAGTTGATTCATTTTGTCTGATTTTCATATGACGATGAATCCGCTTACAGAGATTCTTAGTGGCCATTTTAAAGTTCTTTCAACGAAGAAATTACATTTTGTAAACCTGACAAGAGACTCGCTGACATACGTTAAAGAGGGGTCAGATGGAAGGTATCCGTGTAGTCGAAGAGATCGATCGTCAATTCTTGTAGCTGATATTTACGGTGCAAAAGCTTACCGGGGTCCTGAGGACGATTCAAGCAGCTATTTTCAGTTGTATTATTGTCGTGTATTTGAAAAGAAGAGAGACAAACGCAAAATATGCTTTGAAGTTTCCATGTCCGATTCCGACGAAGAGAATGCTTCTTTGGCTGAAAAATGGGTTCGCACCATCTTGTGGTTGGTCAATGACCCAGAAAAGGAGATTGAAAGCATTCAAGCTGAAAGAAATTTACCCCCTTGTCGCAAGCTTTTGATTCTCATCAACCCATTCAGTGGATCTGGGAGAAGCGTAAGAACATTTCGGGAAAAAGTGGAGCCCATGCTATGTGAAGCTGACATTCAGTATAAACAAATCACCACAGAGTATTCTGGTCATGCGGCAGAGATGATGCAGTCTCTAAATCTTCTAGATTTTGATGGGATTGTCATTTGCTCCGGAGATGGGCTTGTTTATGAGGTAGTCAATGGGCTGATGAGGCGTCCTGATTGGGAAGTTGCCATAAAGATTCCTTTGGGAGTCATTCCGACTGGTTCAGGCAATGCTCTGAGTTTGTCAGCTCTTTATGCCACTGGGCAACCTCATGATTTGACAAGTTCCATATTTGCTGTCATTCGTGGAAAACTACTTGATTTGGACATCTGCTCTGTAGTTACACCGACTGAAAAACTGTTTGCTTTCCTCTCTGTTACGTGGGGATTGGTCTCAGATGTTGACATTGAATCTGAAAAATTTCGATTTTTAGGAGAAACAAGGTTTCTTCTTGGTGCTATAATAAGAGTCATTGGACTCCGTCTGTATCGAGGGCGACTCTCATATTTACCTGTAAACAACACAAGTGATGTTGAGAGTTTTGCGATGAATGTAAGAAGCTCACACATAGAAAGTAAAAACAACTCTGTTCACCATACTATAGTTGGCACAGCAGAAAATTATGAACGACATGAAGTAAATGGGGTTGCAGCCTCCTCTGAAGATAGCACTGCAGTTCTATCCAGCCATAGACGAGGACCCATAGATCATCTACTCCCTCCTCTCAGCGCGAAGCTTCCTTCTAACTGGGTTGTCGAGGAAGGGGAGTTTGTATTTGGCTGTCCACTCTTCCTAAGCCACATTGGAACCGATCTTTTAATGCACCCTGATGGAAAGTTTGGAGATGGTGTTATAGGAATCCTAATTGTAAGGTCTGGAACAGGCAGAGCAACTCTTATGGATGTGTTCAGTAAAATGAAAGATGGATCTCATGTTTTAAACAACCATGTAAAATATGTTAAGGCATCTGCTTTCCGCTTGGAGCCAGACACATCACAGGCAGGCATCATTGCAGTTGATGGGGAGAAGATCGACTATGTGCCAATTCAAGGGCAAATACATAAGGCTCTTGCAAAATTAATGTGTGCTCCACCACCAGAAAATTGAAAAGGTCTGCAAGAGAAATTTGCTTGCATAATTTTGATGGAGTAAACATACGTTACCTTTGTGAAAAATTTTCTAATTCATTACATAGTACCAAGCCAAGGTCAACTTGGCATAATTGTGTAGTTGGAACCCAACTCAACTGAAATTATTTCCAAATTCTAAGCCTAAAGGAAAGTACATTATTACAAATCAAAAATAGAACTTGATGACCTGGGAAATAAATAGGATTTTGTATACAGTTATTACCTGCATCCTCGAGGTAATGCTTTTCCTTCAAGTATAGTGATTTGTTAATAAAATGGGAATTCTTCTTGTTTCAAGTCAACAATTAAGTCAAATGTTGTTGTTGTTCTGACACATAGTAATGCATGTTCATAACACCAGCAATACGTCTTCATTGGAAACAATACAGAATTTACGGCCAGCATGTGCAAATTAAGCGAGAAGCTTTAAAAGAACAAGGCACATAACAATCGCAGGTTTTCTTATTCAATGATATGGAATTTAGTGGCCATGTATTTTGTAGTTTAGCTTCTTTTTAATATCATTTACTTCAGTGTCTCTTGTGGAGATACTACTTTTCAGTAACAATAATATTATTGCTGGAAGTTAACACTTACACCCTTATGTTTAATGGTAATGTATTTACATATCCCTATGCAGTTCATGGCAGGTAACAAATGATTTTTTTTTTTTTTGGTAAGGGGTGAGATTGGACGTCAGCTTGTAAATGAGAAAAACAAGTTGTTGTTGTGTTATTCAATGTGATTATTAATATCATCGTGTGCCCTCTGCAATTTTCCTGGCATCAGATTACTTTGTTTGGTGATTTGCCAGCAGCCAGGAATTATTAATGCACACACGATGTTAATTTTGTCATGACATGCTGATTGCTCATTTTTATTTCAAGTGCATTTTACGTTTTTGCCCAGAATTCCTGTCAGTTTTTGTCTAGGAAAGTTATCCCTGGTCAGCTAAATGAAATTTAAAATTACTCAAGACCAGTACAAATTAAAAATTCTCACAGTTGTGCAATGCAACAACATGATGGAAATTTAAGAGACTCAATATTTTCATTAATTCACTGGCCTCTGTGAACCTTCTCAATAACTAAAAGTAGTTTATTTTTATGAAAAAATATTATTTACAGAGGTTTAGAATAATAATTGTTGTAGAATTGATGTTAATGGTTTTCCTTTATTACTCTAACTACATGCATCATGTTCATGCAAATCCAAATTGATTATCTAATCGGAGATCCTAATATATATAGTGTTCAGTTACTATTTTAAATGCATCACAAGGCTTCTTCTTACGTTGTCGGTAACCGTCATCCATTACTGTCATTACAGACACTATTATTTTATTATGCAACCATCAGCCAATGTATGCAAGAGTTTGTCATACATTATGTATTTAAACATACCTGTATTTATTGATCAATAAATCAACACAAATAAAGGGTTTTTAAATTCAAAAGGCAGTTCAACTCTCAGCCTCTTGAACACTAACGTTTCATTCGTTTGGGGTAACATATAGGTCTTGAAGTAGAGGAATGCAAAACTATATCTATCCTTGATAACTACAACCTGCCTAATAGATACTTTATGTTCAAACGCAAGTGTGCTGCTTTTGCGATCATTTCTGATTATTGCAACACACGACCAATTCCTTGGCTTTAGAAAATTATCTAAGTGGCTAGAATGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JIA7	Sphingosine kinase 2 OS=Mus musculus OX=10090 GN=Sphk2 PE=1 SV=2
Q9NRA0	Sphingosine kinase 2 OS=Homo sapiens OX=9606 GN=SPHK2 PE=1 SV=2
Q9NYA1	Sphingosine kinase 1 OS=Homo sapiens OX=9606 GN=SPHK1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007569 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19279 all species →	YegS_C	YegS C-terminal NAD kinase beta sandwich-like domain	Domain	Interproscan
PF00781 all species →	DAGK_cat	Diacylglycerol kinase catalytic domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001206 all species →	Domain	Diacylglycerol kinase, catalytic domain	Interproscan
IPR050187 all species →	Family	Lipid Phosphate Formation and Regulation	Interproscan
IPR045540 all species →	Domain	YegS/DAGK, C-terminal domain	Interproscan
IPR016064 all species →	Homologous_superfamily	NAD kinase/diacylglycerol kinase-like domain superfamily	Interproscan
IPR017438 all species →	Homologous_superfamily	Inorganic polyphosphate/ATP-NAD kinase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12358 all species →	SPHINGOSINE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0001727 all species →	Molecular Function	lipid kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006665 all species →	Biological Process	sphingolipid metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0017050 all species →	Molecular Function	D-erythro-sphingosine kinase activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0046512 all species →	Biological Process	sphingosine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04718	SPHK; sphingosine kinase	EC:2.7.1.91	Tuberculosis	ko05152	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.