Gene detail

Detailed information of FUN_038732-T1 in Acropora pulchra

Genomic Location: ptg000027l:10716499...10717946
NR annotation: XP_015763397.1, PREDICTED: histone H1.0-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NVM0	Histone H1.0 OS=Xenopus tropicalis OX=8364 GN=h1-0 PE=2 SV=1
P22844	Histone H1.0-B OS=Xenopus laevis OX=8355 GN=h1-0-b PE=1 SV=1
P22845	Histone H1.0-A OS=Xenopus laevis OX=8355 GN=h1-0-a PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000413 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00538 all species →	Linker_histone	linker histone H1 and H5 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005818 all species →	Domain	Linker histone H1/H5, domain H15	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR005819 all species →	Family	Linker histone H1/H5	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11467 all species →	HISTONE H1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030261 all species →	Biological Process	chromosome condensation	Interproscan
GO:0031492 all species →	Molecular Function	nucleosomal DNA binding	Interproscan
GO:0045910 all species →	Biological Process	negative regulation of DNA recombination	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11275	H1_5; histone H1/5	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.