Gene detail

Detailed information of FUN_038807-T1 in Dendrogyra cylindrus

Genomic Location: contig_196:124761...129167
NR annotation: XP_020621671.1, tetratricopeptide repeat protein 28-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_038807-T1

ATGACAAATAGAGAGATAGAGTACCACAGTCAAGTCCTTAGCATTGCCTAtgaactgggggacaaggctgcGGAAAGGGCTGCGTTTGGCAACCTTGGCAATGCTTTCCGGAGTATGGGTCGTTTTGAACAAGCCATTGAGTGCCACAGCCAAGCCCTTAGCATTGCCTATGAACTGGATGACAAGGATGCAAAAGCAGCTGCCTTTAGCAACCTTGCTGATGCATTCAAGAGcatgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTGTGGAGAAGgaggtgcttatggcaatcttggcaatgcttaccagagtctgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTgtggagaaggacgtgcttatggcaatcttggcaatgtttaccggagtctgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTGtggagaaggacgtgcctatggcaatcttggcaatgcttacgatagtctgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTgtggagaaggacgtgcttatggcaatcttggcaatgcttacgatagtctgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactagGAGACAGGTGTGGAGAAGGAGGtacttatggcaatcttggcaatgcttaccagagtcttggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTgtggagaaggacgtgcttatggcaatcttggcaatgcttacgatagtctgggtgattttaaacaagccatagagTACCACACGCAACATCTTAgtattgccaaagaactgggagaCAGGTGTGGAGAAGgaggtgcttatggcaatcttggcaatgcttacgatagtctgggtgattttaaacaagccatagagtaccacacgcaagatcttagcattgccaaagaactgggagaCAGGTgtggagaaggacgtgcttatggcaatcttggcaatgcttaccagagtcttggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTgtggagaaggacgtgcttatggcaatcttggcaatgcttaccggagtctgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTGTGGAGAAGgaggtgcttatggcaatcttggcaatgcttaccagagtcttggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTGTGGAGAAGgaggtgcttatggcaatcttggcaatgcttaccagagtctgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactagGAGACAGGTgtggagaaggacgtgcttatggcaatcttggcaatgcttaccagagtctgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTgtggagaaggacgtgcttatggcaatcttggcaatgcttaccagagtctgggtgattttaaacaagccatagagtaccacacgcaagatcttagcattgccaaagaactagGAGACAGGTgtggagaaggacgtgcttatggcaatcttggcaatgcttaccagagtctgggtgattttaaacaagccatagagtaccacacgcaagatcttagcattgccaaagaactgggagaCAGGTGTGGAGAAGgaggtgcttatggcaatcttggcaatgcttacgatagtctgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTGTGGAGAAGgaggtgcttatggcaatcttggcaatgcttaccggagtctgggtgattttaaacaagccatagagtaccacacgcaagatcttagcattgccaaagaactgggagaCAGGTGTGGAGAAGgaggtgcttatggcaatcttggcaatgcttacgatagtctgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTGTGGAGAAGgaggtgcttatggcaatcttggcaatgcttacgatagtctgggtgattttaaacaagccatagagtaccacacgcaacatcttagcattgccaaagaactgggagaCAGGTGTGAAGAAGgaggtgcttatggcaatcttggcaatgcttacgatagtctgggtgattttaaacaagccatagagTACCACACGCAAGATCTtggcattgccaaagaactgggagaCAGGTCTGGCGAGGCAGCTTCGTATTGCAATCTTAGCCATGATTACCGTAGTCGCAGGAGCTTAAAACAAGCCGATAAGTACCAGAAGCAAGCTCTTAGTATTTCCACAGACCTTGGGCTGAAACATACGAAAGCAGCTGCTTTTGGTTGTCTTGGCATTTTTTCCCATGTTCTGGGTGATTTCGAACAAGCCATAGAGTATCACACGGAAgctcttagcattgccaaagaactgggagaGAGGCATGGAGAAGGATGCGCTTATGGCCATCTTGGCGATGCTTACCAGAGTCGGGGCAATTTGGAACAAGCCATAGAGTACCACACgcaacatcttagcattgctCAAGAAGTTGGGGCCATGGATAATGAAGCGCATGCATGTTATAATCTGGGATGTGATTTTGAATTGTCAGGTGCTTTGCAAGAAGCTCTTGATTATTATCAATCTAGTGCAAAACGGTTCGATGAAATGAGAGCTCTTCTTCATTCCGAAGATGTGTGGAAAATAACCTTTCGCAACCAGTATGAAGCCGCTTACACTGCTCTGTGGAAAACTCTGTTAAGCATTGAAAGAGTTGACGAAGCTTTGATTGCTGCTGAACAAGGACGAGCACAGGGTTTGATGGATCTCATGAAATTGCAGTATGACTCTGAATTGCCAGCTTCAGAGGCATTAGAACCTAAAGAAAAGATTTTTGACATGTTAAGTGATTTATCTACccaaacagtttttgcagcGCTGGAAAGTAATATAATTCGTTTATGGGTACTCAGGACAGGAAGGAAAGTTCAGTTTAGACAAAAAGAGGTAGAAAAAGATGCTGTTACTTTCTTGGAGTGTTTAAGGAGGGTTGCGGTCAAGGAAATTCAACGCAAACGTTCTGCGAATGACCTGAGAGACGAACTGCCACCCACTAAAGAATCTGGCCAGGAAGCAGTCAAGTCATCACGCTGCAAAAGCAATCCTTTGTGCTTATTTCATGATTTGATTATTGGTCCCATTGCAGACTTGCTTGAAGGTGAGGAATTGATCATTGTCCCGGATGGGCCATTATGTTTGGTTCCTTATGCTGCATTTTTAGATGGCAAATCAAGGTACCTAAGTGAGTCTCTCAGGATACGCATTCTTCCTTCACTGACGAGTTTAAAACTTATCACACATTCTGCTGAGAGCTACCACAAAGAGAGTGGGGTGCTGCTTGTGGGAGATCCATGTCTGGAGGAAATTACCAACATATTTAGTGTGCCGAAATTTAATCCTTTGCCATACGCCAGAAAGGAAGTTGAGGCAATAGGTGACATGCTGAATATCTCACCTCTAACAGGAAAAGAAGCTACAAAGGGTGAGGTGCTGAGACGAATTACTTCGGTTGCTGTGGTACACATTGCTGCCCATGGAAAAATCGAAACCGGTGAGATTTTGCTGGCTCCAAATTGCGTAGAGACTTCCACGATCCCTGAAGAGAATGACTACGTTTTGACTATGTCCGATGTGCTGGCGACGAAGATTCCTGCAAGGCTTGTTGTGCTTAGTTGCTGTCACAGCGCAAAAGGCAAGGTCATGGCTGAGGGTGTGGTCGGTATCGCACGGGCTTTCCTGGGTGCTGGTGCTCGTTCTGTTCTGGTGTCCCTCTGGGCTATTGATGACGAGGCCACCATGGAGTTTATGATAACCTTCTACAGACATCTGCATCGTGGATGTAGCGCCAGTGTGGCTCTTCACCAGTCTATGAAATGTCTCCGAGAGTCAGAGAAGTTTAGTGACGTAGAGTACTGGGCTCCATTTATACTCAtcggtgatgacgtcacgatAGAATTTTGA

Transcript

FUN_038807-T1

Protein

Uniprot

Uniprot term	Description
Q80XJ3	Tetratricopeptide repeat protein 28 OS=Mus musculus OX=10090 GN=Ttc28 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12770	CHAT	CHAT domain	Domain	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13176	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR024983	Domain	CHAT domain	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000132	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0001965	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005092	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24936	TTC28; tetratricopeptide repeat protein 28	-	Cilium and associated proteins	ko03037	deepkoala