Detailed information of FUN_038828-T1 in Siderastrea siderea

Genomic Location: contig_46:4634534...4724518
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17213
all species →		Hydin_ADKHydin Adenylate kinase-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR033768
all species →		DomainHydin adenylate kinase-like domainInterproscan
IPR033305
all species →		FamilyHydrocephalus-inducing-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23053
all species →		DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003341
all species →		Biological Processcilium movementInterproscan
GO:0005930
all species →		Cellular ComponentaxonemeInterproscan
GO:1904158
all species →		Biological Processaxonemal central apparatus assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17570HYDIN; hydrocephalus-inducing protein-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_038828-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
19TPM > 0
7Conditions
63.3Max TPM
3.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 4 4.42 63.26
holobiont · low.pH Control.temp 20 2 1.51 24.09
holobiont · control.pH_high.temp 20 1 1.89 37.81
holobiont · control.pH Control.temp 19 6 2.50 25.91
Whole organism 4 4 25.45 31.99
unannotated 1 1 7.98 7.98
live coral tissue/skeleton 1 1 12.31 12.31

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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