Gene detail

Detailed information of FUN_038867-T1 in Siderastrea siderea

Genomic Location: contig_46:5255064...5272501
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_038867-T1

ATGGCTCAATCGTTAATACCACTGCCCTCTGAACAAGTAATAGCAGAATGTCGGGCGTTCGTATTCTTTTATGATATTCAGCTAAATCGATGGACTGAAGTGGGCGAACAGAACGTTTACTCTAGAATACAACTGATTTGCAGTCGGCAACCCGGAAGTACAACGCTCTACAGATTATTTGGAAGACTAGAATCTACGGGACTGGTAACAATCAACACTGCTCTAACTGAGAGGGTGACGTATGTGGTCACCAGCCCTTCATGGCACCAAATCCGCATCGATATAGGAATGATTTATGGCTTGCGTGTGAGCCATGAATCTGATGCAACAAAGTTCTCTGTCATAATTCAACACACACTGCGCTCTTTGCAAGGTACCCAGGGTCAAGCACCTTGGCCTGCCCCTCCTGACCAACACACAACAGGCCCTGCAAACATACCTGCCACATCTCCTGTTGGAATGCCAAGAAATCCAGACTCTCTACCTCCAGACGGGGGTAGAGCACAGAAAAGGCGTGACTTTGATGTGCAGATTGATTCTCTTTGCCAAACACTGAGTGATGCAATCGTGAATGGAAAACAGCAGCAGGCCCTAGAGCTTGTCAGAAAAATGGTTTCTCAGAAGCTTAACCTCAGTATTAAGCTTAAAAATCCTACACTTGTAACTATGGACTCAGGAGGAAACACAATAACTATACGAGTGGTTGTTGAGGATAAGGAATCTTCTGGGGGAACATTTAGCATGAAGGTTCTGCCAACGGCTACAATAGAGAAACTGCAACAAGAGGTATTTGACAGATATGGTTTCCCAGTGCAAGTCCAGAAGTGGATTGTGGGTAGAAAAATTCCTAAACCCCAGGAAACATTACAAGCTCTGAATGTGACGCAATCTGGGACCACAGTGTTCTTGTACTTGTTATCTGGTAAGACAGTTGGACTAAAGCGATCTGATGTGGAAAAATTTGGACGTGGGAATGCCACGCCCACAAGTTCAACTTTGAGTGCTGCAAACTCCAGCGGCAGTGGCAGTTTTGGAGTAACCACCGCTACAGCAGCAACTACTGCATCTGTAGCAACCATGAGACACGCTGTGAGTGTTCCAAACCTCTCCCAAAATGAGTCTCATGTATTAGCTGCACCTAACAGGGTAGAACAGTTATCTGCATCCAACCCCTTACCTCAGGTAAGACCTGACCCACAACCATCAGTTGCTAACCAAAGAGAAAACAGCGGTCCAGCCACGTTACCCATTCACCTGGGCATGTCCATCAATGACATGCGGGACATCCTTGCTCAATCAGCTGGAGGCCAAGGGGATGGGTCTGCCAATCCTCCCAACCCTCCCCCTCAAGAAATGTTTGTGAACAATTTGCTGGAGCCTGTGGAGCAGCAAGCAGAGGAGGATGGGCACCCTGTAGGCTGGACCTGTGAAGTGTGCACATACATAAACCAGCCAACAAGACCTGGCTGTGAGATGTGCAGTACAGACAGACCGGCAGGTTATGTGGTGCCTGCTGGCGTACAGTTGGATGAAAGAGAGAGGGATCGAATTGCTGCAGAGGAAAGAGAAGAGGCACTCTTTCAGCAGGCTGAGCGGAAGCGACAGCAAGAGGAACAGCGTGCCAGACAGCAAAACTTGGCCACTCTTCTGCAGACAGCCCAGCAAAGTCTCATTCCCAACCAAGAGGAATTCGACTGCGGTATTTGCTTTACTCCAGTGGAACCTGGGGAGGGAGTTGTGCTCAGAGAATGTCTACACAGGTTCTGCAGgGACTGTCTGAGTGAACACATCCGACACGCAACAGATCCGGAAGTACAGTGTCCGCACCAGGATGATGATTACGCCTGTCACGCCACCATCACGGGGCAAGAAATTCAAGCGCTGCTTCCAGAACaagatttcaacaagttcttgAACCGCAGCCTCGCTACAGCAGAAAGTCAAGCTGCCAACAGTTTCCACTGTAAAACTCCAAACTGTGGTGGGTGGTGTGTGTACGAAGATAATGTCAACACCTTCTACTGTCCCGTGTGTGAACAACCAAACTGTCTGACGTGCAAAGCTATTCACGTTAACATGAACTGTAAGGAGTATCAAGATGATCTGAAAAGGAGAGCACAAAATGACGAGGCCGCGAGAAAAACGCAACAGTTTCTTGAGGGCATGGTTGCAGGTGGAGACGCCATGCACTGTCCCGTGTGTGAGATTATTCTACTCAAGAAAGACGGCTGTGATTGGATGAGATGCAGCATGTGTAGAACGGAGATATGCTGGGCCACTAGGGGACCGAGATGGGGGCCTGGGGGCGCTGGAGATATAACTGGAGGGTGCAAGTGTCGTGTTGGTGGAAAGAAATGCCACCCCAGATGTAAAAACTGTCATTAG

Transcript

FUN_038867-T1

aaaagacgccatgttgcgCCAACTGGCTAATTTTGAGCGGAATTTCAGTTTCACTTTGCTGTTTTCCCCAGCTTCTGCGTATTAACAATTTTATTCTCCAACTTGCCTTCAATGCCTTCAAACTCGGATGGCTCAATCGTTAATACCACTGCCCTCTGAACAAGTAATAGCAGAATGTCGGGCGTTCGTATTCTTTTATGATATTCAGCTAAATCGATGGACTGAAGTGGGCGAACAGAACGTTTACTCTAGAATACAACTGATTTGCAGTCGGCAACCCGGAAGTACAACGCTCTACAGATTATTTGGAAGACTAGAATCTACGGGACTGGTAACAATCAACACTGCTCTAACTGAGAGGGTGACGTATGTGGTCACCAGCCCTTCATGGCACCAAATCCGCATCGATATAGGAATGATTTATGGCTTGCGTGTGAGCCATGAATCTGATGCAACAAAGTTCTCTGTCATAATTCAACACACACTGCGCTCTTTGCAAGGTACCCAGGGTCAAGCACCTTGGCCTGCCCCTCCTGACCAACACACAACAGGCCCTGCAAACATACCTGCCACATCTCCTGTTGGAATGCCAAGAAATCCAGACTCTCTACCTCCAGACGGGGGTAGAGCACAGAAAAGGCGTGACTTTGATGTGCAGATTGATTCTCTTTGCCAAACACTGAGTGATGCAATCGTGAATGGAAAACAGCAGCAGGCCCTAGAGCTTGTCAGAAAAATGGTTTCTCAGAAGCTTAACCTCAGTATTAAGCTTAAAAATCCTACACTTGTAACTATGGACTCAGGAGGAAACACAATAACTATACGAGTGGTTGTTGAGGATAAGGAATCTTCTGGGGGAACATTTAGCATGAAGGTTCTGCCAACGGCTACAATAGAGAAACTGCAACAAGAGGTATTTGACAGATATGGTTTCCCAGTGCAAGTCCAGAAGTGGATTGTGGGTAGAAAAATTCCTAAACCCCAGGAAACATTACAAGCTCTGAATGTGACGCAATCTGGGACCACAGTGTTCTTGTACTTGTTATCTGGTAAGACAGTTGGACTAAAGCGATCTGATGTGGAAAAATTTGGACGTGGGAATGCCACGCCCACAAGTTCAACTTTGAGTGCTGCAAACTCCAGCGGCAGTGGCAGTTTTGGAGTAACCACCGCTACAGCAGCAACTACTGCATCTGTAGCAACCATGAGACACGCTGTGAGTGTTCCAAACCTCTCCCAAAATGAGTCTCATGTATTAGCTGCACCTAACAGGGTAGAACAGTTATCTGCATCCAACCCCTTACCTCAGGTAAGACCTGACCCACAACCATCAGTTGCTAACCAAAGAGAAAACAGCGGTCCAGCCACGTTACCCATTCACCTGGGCATGTCCATCAATGACATGCGGGACATCCTTGCTCAATCAGCTGGAGGCCAAGGGGATGGGTCTGCCAATCCTCCCAACCCTCCCCCTCAAGAAATGTTTGTGAACAATTTGCTGGAGCCTGTGGAGCAGCAAGCAGAGGAGGATGGGCACCCTGTAGGCTGGACCTGTGAAGTGTGCACATACATAAACCAGCCAACAAGACCTGGCTGTGAGATGTGCAGTACAGACAGACCGGCAGGTTATGTGGTGCCTGCTGGCGTACAGTTGGATGAAAGAGAGAGGGATCGAATTGCTGCAGAGGAAAGAGAAGAGGCACTCTTTCAGCAGGCTGAGCGGAAGCGACAGCAAGAGGAACAGCGTGCCAGACAGCAAAACTTGGCCACTCTTCTGCAGACAGCCCAGCAAAGTCTCATTCCCAACCAAGAGGAATTCGACTGCGGTATTTGCTTTACTCCAGTGGAACCTGGGGAGGGAGTTGTGCTCAGAGAATGTCTACACAGGTTCTGCAGgGACTGTCTGAGTGAACACATCCGACACGCAACAGATCCGGAAGTACAGTGTCCGCACCAGGATGATGATTACGCCTGTCACGCCACCATCACGGGGCAAGAAATTCAAGCGCTGCTTCCAGAACaagatttcaacaagttcttgAACCGCAGCCTCGCTACAGCAGAAAGTCAAGCTGCCAACAGTTTCCACTGTAAAACTCCAAACTGTGGTGGGTGGTGTGTGTACGAAGATAATGTCAACACCTTCTACTGTCCCGTGTGTGAACAACCAAACTGTCTGACGTGCAAAGCTATTCACGTTAACATGAACTGTAAGGAGTATCAAGATGATCTGAAAAGGAGAGCACAAAATGACGAGGCCGCGAGAAAAACGCAACAGTTTCTTGAGGGCATGGTTGCAGGTGGAGACGCCATGCACTGTCCCGTGTGTGAGATTATTCTACTCAAGAAAGACGGCTGTGATTGGATGAGATGCAGCATGTGTAGAACGGAGATATGCTGGGCCACTAGGGGACCGAGATGGGGGCCTGGGGGCGCTGGAGATATAACTGGAGGGTGCAAGTGTCGTGTTGGTGGAAAGAAATGCCACCCCAGATGTAAAAACTGTCATTAGAGGCGTCTGCAGCGAGTATGCAATTGTTAGTTAGAAATTGGGCCACTATGAATGTGGAAACTGTCACTAAACGAGTTTATATTTGAGATGTTCAGTTATCAGTTAGAGGTTGGCAAAAAAGCAAACGTAATTTCGTGTTAAGTggtagggggggagggggggaagggggggaggTCGCGGTTAAAAGTGAAGTGCCTAAAAAGAAACTTCTAAGTAAGTGGGGGAGTTAAAAACCAACGGATACAATGTTGTTCAGATGTTAATACCTAAACTTTGAGCAAAAATGTTGTTCCAGAGTCAGTGTTTCACCAACCTCGTTCACAGGGTCCACTCTcttcctgggaacgaggttggtgtTTCACTGCAATCAAACGTTACTTTTTCAATATACTGTACAAGGTATTCATGCGTTTGCAAGTTTAAAACCACTGCCCGTTATTTTAAAGTATTATTTTCGATCAACCTTCGCTGTAGGGACCCCGGAAACAATATTCTAATTGCCTTTTTCTTGGTTTTCAATGGCGAACAAAAAGCCATCCCTTAAACGTGGAATGAAAATGTTTCGGTGCAATCAAGCGTCAAGTTTTTTTTATGTAAGGTATTTTTGATGTCGTGAACGAATAAATACAGGGATACATATTTTTTTCGGTTCCTAATTTAAAAACTCGGCTGTTACCAAGTGGATCTGTCATTGGCACGGCACGGtaccctttttgttttttaattcattGTCTATGGTTTTTTCAGTTTGTCGACAGGCTTAGATTTCAGTTTCATATCGGCTATGGGTTAACGGCGGAATGTTAAAAATAATGCACCAAATATATAGTGTATGAAGTTTAATCACAATGATAACAAAAAGCTATTTTAAAGGCCTTACAACTTTAGCCTGGGTTATCAATCAACGCGGCGTACCAAATAGAACGCGCTTGTATGGAAGAGGATTCAATACCCAACGAGTGTTACTAAATTCACTCGAGTCTCCAGTTTCGTTTTACATCAGCCCGGTTGTTTGTAAGTCGATTGACGCGTATCTGGGGTTAAGGGCCTGACTGAACTAGGAAACATTCtttccagacatgtttccttgggtggctTAACTGGGAAACATACGTTTCGAAAGCAAAATTTACGTctgtgaagcaaaaatgttttcgacttgattcagaaacatttccttacttccaagacgcaaaattAACTTCCGCAACATATGTTTCTCGCGCGgttaaactgggaaacattagcgtctgcagcaatgtttccgcaacaatgtttcctagtttagcctggggcccgtttctcgaaactcttgataacttaccgggcccggtaagtattttttcgagctcatttatttatcagttaacggtaattattggcgcaaacttagcgataggCTTCATGAAGTTATAAAgattgaaattttgctttcaaaatcaataaaaattgtatagctattggataatattgtgcacctaaaatagctTTCGggccggaaagttatcgggagttttgaGAAACGGTCCCGAGGCCATAAAACATGTCAAAGTTATCTAAGGTTACTGGAGCTGTTTCTTATTTCGTTATGTTTTGATTCTAGCTTCAACGTATCCagtatagaaaaaaaaaggcaaaagttACATTAAGCAAGAAAACACTATGCCGTCAACATCGACATCTGATACACAGCCAACCTAGTTGTCAGGGCTCTTTCTGATttccctgggaacgaggttgatacATGACCACATGATATACAATCGCCATCCAATCAGAGCGCGAGATACATTAACCAACGTTTATAACAAATGCAGACGTTTTTAGATAGTTTATTTACACCGCGCTCATTTTTTTCACATTATTTTATAGCTAAAGGAATCTATTTACACATGGAGAATTTACAAGAAATGTATACAACGCTTTCATGAAATAaatcaagttttaaaaaatttcaataaATAACTTTTCACTGCTTGTGATGTAGTCACGTCTCATTACAAAGCAACAGATAAAGCAAACCTTGATTAATCCGGAATCCGTCTCTGCTTTGCAGTTTTCTTAGTTTATGTACATAACTAGTGGCACCAGGAGCTGGTGGCACATACTAACAGTAGAAACTAAAACCCTTCACAAAACTTCGGCGTAGTTGTATTCAGAAATAGTGTTGTTTTGTCCATCTTGCCTGAAACTCTAGTTCTATCTACActctacatttttcttttttaaatattgATTTGAGAAAGTAATTGAGCTTCTTTGTGGCTTTTCATCgaaaaataacttgcacatgaGTAATGAGAAGACCACATGGCTAGAATCAAATCAGAGTTAAGATAATATTTGCTTGTAAAAATAAATTCTGTTGAAAATCAACCAATCAGCGTTGTTTTATTTCGGTCTTGGTCCCAGTCTCCTGACACTTCCATTCTGTAGTCTCTTAAGTAAGAGCGTCGTCTCAATCTTGGGTCCAGTCTCCAGCTGATCAGCTGCGGTGTTGAACGCTCGCCC

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00641 all species →	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00568 all species →	WH1	WH1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR051628 all species →	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR000697 all species →	Domain	WH1/EVH1 domain	Interproscan
IPR047558 all species →	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, BRcat domain	Interproscan
IPR047559 all species →	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclass	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR047557 all species →	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, Rcat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770 all species →	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0097039 all species →	Biological Process	protein linear polyubiquitination	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10630	RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_038867-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

56TPM > 0

7Conditions

543.6Max TPM

107.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	11	72.52	215.27
holobiont · low.pH Control.temp	20	15	144.62	489.40
holobiont · control.pH_high.temp	20	12	146.08	543.62
holobiont · control.pH Control.temp	19	12	88.68	402.56
Whole organism	4	4	26.83	31.27
unannotated	1	1	21.65	21.65
live coral tissue/skeleton	1	1	23.86	23.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	215.27
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	193.58
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	181.91
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	178.02
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	175.35
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	155.92
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	107.53
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	72.15
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	71.25
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	67.57
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	31.90
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	489.40
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	312.93
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	276.13
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	268.19
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	251.41
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	223.77
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	191.00
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	167.07
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	141.30
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	128.95
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	116.41
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	102.55
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	84.80
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	79.12
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	59.42
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	543.62
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	506.25
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	482.30
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	392.61
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	347.79
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	167.32
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	165.82
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	116.92
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	80.77
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	41.35
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	40.78
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	36.01
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	402.56
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	330.01
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	233.45
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	155.33
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	100.91
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	99.73
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	72.91
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	72.45
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	65.28
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	64.78
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	47.78
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	39.77
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	31.27
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	30.77
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	25.93
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	19.34
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	21.65
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	23.86

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.