Genomic Location: ptg000027l:12806262...12822115
NR annotation: XP_029214366.2, nucleosome-remodeling factor subunit BPTF-like isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families
| CDS |
| FUN_038916-T1 |
| Transcript |
| FUN_038916-T1 |
| Protein |
| FUN_038916-T1 |
| UniProt accession | Description |
|---|---|
| Q12830 | Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens OX=9606 GN=BPTF PE=1 SV=3 |
| Q9W0T1 | Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster OX=7227 GN=E(bx) PE=1 SV=2 |
| Q6BER5 | Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis elegans OX=6239 GN=nurf-1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004592 (this species only) |
| Ubiquitin family | E3|E3 activity RING|PHD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00439 all species → | Bromodomain | Bromodomain | Domain | Interproscan |
| PF15613 all species → | WSD | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | Family | Interproscan |
| PF02791 all species → | DDT | DDT domain | Family | Interproscan |
| PF00628 all species → | PHD | PHD-finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018501 all species → | Domain | DDT domain | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR019787 all species → | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR001487 all species → | Domain | Bromodomain | Interproscan |
| IPR001965 all species → | Domain | Zinc finger, PHD-type | Interproscan |
| IPR028941 all species → | Domain | WHIM2 domain | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR019786 all species → | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR036427 all species → | Homologous_superfamily | Bromodomain-like superfamily | Interproscan |
| IPR038028 all species → | Family | Nucleosome-remodeling factor subunit BPTF | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45975 all species → | NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0016589 all species → | Cellular Component | NURF complex | Interproscan |
| GO:0035064 all species → | Molecular Function | methylated histone binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11728 | BPTF, E(bx); nucleosome-remodeling factor subunit BPTF | - | Chromosome and associated proteins | ko03036 | deepkoala |
