Detailed information of FUN_038936-T1 in Acropora pulchra

Genomic Location: ptg000027l:13041129...13042514
NR annotation: XP_015772913.1, PREDICTED: late histone H2A.2.2-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7ZUY3Histone H2AX OS=Danio rerio OX=7955 GN=h2ax PE=2 SV=3
Q6GM86Histone H2AX OS=Xenopus laevis OX=8355 GN=h2ax PE=1 SV=3
P13630Histone H2A OS=Paracentrotus lividus OX=7656 PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000315 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00125
all species →		HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF16211
all species →		Histone_H2A_CC-terminus of histone H2AFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009072
all species →		Homologous_superfamilyHistone-foldInterproscan
IPR007125
all species →		DomainHistone H2A/H2B/H3Interproscan
IPR002119
all species →		FamilyHistone H2AInterproscan
IPR032454
all species →		DomainHistone H2A, C-terminal domainInterproscan
IPR032458
all species →		Conserved_siteHistone H2A conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23430
all species →		HISTONE H2AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046982
all species →		Molecular Functionprotein heterodimerization activityInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000786
all species →		Cellular ComponentnucleosomeInterproscan
GO:0030527
all species →		Molecular Functionstructural constituent of chromatinInterproscan
GO:0000790
all species →		Cellular ComponentchromatinInterproscan
GO:0006342
all species →		Biological Processheterochromatin formationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11251H2A; histone H2A-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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