Gene detail

Detailed information of FUN_039236-T1 in Siderastrea siderea

Genomic Location: contig_47:3147323...3160026
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_039236-T1

atggcggctaaatTCTCGAGATTTCACGAAAATCGCTCTTACGAGACCGGAAATGCAGACGTTTCACATTTTGACGATGATGAGCCCACAGTCGAGAAAGCAACTTTGGATGCTCATATCACTGAGGAAAATATTGGATACCAGATGGCTCTCAGACTGGGATGGACTTCTGGATCAGGATTGGGGAGGAAGAAACAAGGTCGTACAGAGCCAATACCCTTAGTTATGAAGGAGGATTCCCTCTGTCTTGGTCGTCTTACTTTAGAGTTTGAGCAGGCTGATGAAGCAACTCGTAACAGAAAGGCGTTGGAGATAGAGAAAGAAGACACTGATGAACTTCAGCAAAAATATCAGAATGAACAAGAAAAGGAGAAAGCAATTGAGGAGAGTCTGAGAGATTTGAAAGAGATGTTCTACTGTGAACTTTGTGACAAACAGTACTACAAATACAAGGAATACGACAACCACGTCAACTCATATGATCATGCGCATCGCCAGagaCTTAGAGAGCTCAGGCAAAGAGAATCCACACGGAATATTTatgcaaaaaagaagaaagaacagAAACAAATGGAAAAGGAAATGCAGCGACTTCACCTTCTTGCTGGGAAAAGTGGTGAATCAAAATCTAATGCAGGATTTAAAGTAGCATTCAAAACTTCATCAAACGTCCCAAGCACTAGGTCTGGGTTCAAGCCAATTACAGTACAGCAGGGTTTTAGAGCAgttccaccaccaccccctgAAAACCTACCTCCTTTGCCAAGTGAGCCTGCCCCACCCCTCCCTGATGAACCAGCTCCTCCCCCACCACCTCCCCCTCCAGGAGATCAGCAGACAAAGAAGCCATTTAGCTTCAAGATGGGTGGTTCCTCAGGGGACCCTAGTGAGGCCAAGACATCTGGCATAGCCACACCTACAAAACAGGGTCTCTCCTTTAGCCTTGGCAACAAGAAGGGTGGAAATGTGATGCAGTTTGGAGTAAAGACAAAACCACTCAAAAGCACTGCCTCTGCTTTTGCCGAATCGAGCAgcgaagaggaggaggaggacatGCCAGAGGAAGACACAAGAGTTGCATTTGAGAATGAGCAGCTGATGTCTACTCCAACACAACAACAAGATACGCTGGAGAAAGTCATTGAATATGCTGATACCTTGAGAATCAAGGAAGCACTGAGGCCCAAATTGTTGATCAGGTTTGTTAGAGGTACCGATCAGGGAGGAATACTTCCTGGAACAATCCCAACATCTGAGACAGCTGAAGCAAATAATGAACAGGCTACTGATGTCAAGAAAAGGTCAttcaaagagagaaaaaaagacagaCGTAGTGTTGACAGAGATGATTCCGGTGATTCGGGAAAGGAAGCTGTCATCGAGTCCAAGAAGAGGTCATTTAAGGAGAGAAAAGATTACACACGTAGCAGTGACAGAGAAGATCTGGGTGACTCAGGGAAGGGAGATGGTGTTGACATCAAGAAGAGGTCATTTAAGGAAAAACAGGAACACAGACGTAGTGTTGACAGAGATGATTTGGGTGGTTCAGGAAAGGAAGCGGACACTGAGATTAAGAAGAGGACATTTAAGGAGAGAAAAGGTTACAGACGTAGCATGGACAGAGAAGAATCGAGTAGTACTAGTAGTGGAAGTGAAGCTGAAACGAAGATTGAGACTTCCAGTATTGGAGACAAGCAACGGTCATTTCAAGAAAGAGGAGAATCAAGACATAAAAAGGACAAGGAATACTCTGGCAGTAGGGGGAGAGATTCACCGGATAGAAGAAAAGATTACAAAGACAGGAAAGGTTCCAGTAAAAGGAAAAGTGGCTCtaaggaaagaaaggaagataAGTATAAGTATGAACAAGCAAAAGTTTACGAGGATAAGAAAGAATCCAGAAAGAAGGATTCAAGAgacagaaaaaatgaaaaatgtgacTACAGAGAATCAAAAGATGGGGGCTATAGGCGGAAATCATCAAGCAAGAATAAAGACTCGTATGAGGGAAAAAGAGAATTTCGTGAATGA

Transcript

FUN_039236-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47251 all species →	FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_039236-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.