Detailed information of FUN_039392-T1 in Siderastrea siderea

Genomic Location: contig_47:4971530...4975767
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02136
all species →		NTF2Nuclear transport factor 2 (NTF2) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045875
all species →		FamilyNuclear transport factor 2Interproscan
IPR018222
all species →		DomainNuclear transport factor 2, eukaryoteInterproscan
IPR002075
all species →		DomainNuclear transport factor 2 domainInterproscan
IPR032710
all species →		Homologous_superfamilyNTF2-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12612
all species →		NUCLEAR TRANSPORT FACTOR 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006606
all species →		Biological Processprotein import into nucleusInterproscan
GO:0006913
all species →		Biological Processnucleocytoplasmic transportInterproscan
GO:0044613
all species →		Cellular Componentnuclear pore central transport channelInterproscan
GO:0061608
all species →		Molecular Functionnuclear import signal receptor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_039392-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_039392-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
71TPM > 0
7Conditions
1,083.0Max TPM
394.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 18 476.14 1,083.04
holobiont · low.pH Control.temp 20 15 360.65 705.47
holobiont · control.pH_high.temp 20 16 391.06 812.41
holobiont · control.pH Control.temp 19 16 463.82 816.60
Whole organism 4 4 22.77 26.56
unannotated 1 1 52.85 52.85
live coral tissue/skeleton 1 1 43.36 43.36

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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