Detailed information of FUN_039393-T1 in Siderastrea siderea

Genomic Location: contig_47:4976505...4993683
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003771 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for FUN_039393-T1 in Siderastrea siderea.
 InterPro
InterPro termTypeDescriptionSource
IPR026708
all species →		FamilyCentrosome and spindle pole associated protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21616
all species →		CENTROSOME SPINDLE POLE ASSOCIATED PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000922
all species →		Cellular Componentspindle poleInterproscan
GO:0005813
all species →		Cellular ComponentcentrosomeInterproscan
GO:0005874
all species →		Cellular ComponentmicrotubuleInterproscan
GO:0032467
all species →		Biological Processpositive regulation of cytokinesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_039393-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_039393-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
76TPM > 0
7Conditions
1,096.7Max TPM
364.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 18 335.44 817.58
holobiont · low.pH Control.temp 20 18 498.04 1,096.70
holobiont · control.pH_high.temp 20 17 392.70 1,082.77
holobiont · control.pH Control.temp 19 17 332.32 930.06
Whole organism 4 4 23.93 28.76
unannotated 1 1 20.84 20.84
live coral tissue/skeleton 1 1 22.28 22.28

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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