Detailed information of FUN_039603-T1 in Siderastrea siderea

Genomic Location: contig_48:1441703...1470312
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02538
all species →		Hydantoinase_BHydantoinase B/oxoprolinaseFamilyInterproscan
PF19278
all species →		Hydant_A_CHydantoinase/oxoprolinase C-terminal domainDomainInterproscan
PF01968
all species →		Hydantoinase_AHydantoinase/oxoprolinaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003692
all species →		DomainHydantoinase B/oxoprolinaseInterproscan
IPR049517
all species →		DomainAcetophenone carboxylase-like, C-terminal domainInterproscan
IPR002821
all species →		DomainHydantoinase A/oxoprolinaseInterproscan
IPR045079
all species →		FamilyOxoprolinase familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11365
all species →		5-OXOPROLINASE RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0016787
all species →		Molecular Functionhydrolase activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006749
all species →		Biological Processglutathione metabolic processInterproscan
GO:0017168
all species →		Molecular Function5-oxoprolinase (ATP-hydrolyzing) activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_039603-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_039603-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
68TPM > 0
7Conditions
753.0Max TPM
232.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 15 257.87 728.25
holobiont · low.pH Control.temp 20 14 204.89 614.31
holobiont · control.pH_high.temp 20 18 233.98 570.34
holobiont · control.pH Control.temp 19 15 300.80 753.05
Whole organism 4 4 14.28 15.76
unannotated 1 1 10.20 10.20
live coral tissue/skeleton 1 1 14.93 14.93

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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