Gene detail

Detailed information of FUN_039773-T2 in Acropora pulchra

Genomic Location: ptg000031l:11559...31800
NR annotation: XP_029200061.2, dentin sialophosphoprotein-like isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_039773-T2

ATGAGTAAAGATGGGCTGATGAAAAGTAGAGTGAAGCCTGGGAAAGCCGTTGTGGTATCAGGAACAAGTGCACGACCATCATATAGCGATACACCTGTCGATCTCTCAGCTGATGATAAGGATTTAGTCTTGGAATACTCAGATATGTATGAACCATCAAAGAGTGCTGGTTTTGTGGACATTCAAGATGGTGATGCCATTTCAGAAAGCAGTGATACGGAGATTGTCGCTCACACTGAGGAACAGGTGCGGTATGATAATAATGCTTCTTCAGGCGATGATGACAGTGATAATGATGACAACGACATCAATCATGGTCCACCACCACTTGATAGTGACGATGAGGATTCTGATGATGATGTTCAAGTGCTGACAGCTCCTGCTGTAGGAGCTAGTGCGGCACTGAGCTCTAGGAGAACTGTAGTGTCAAGTGAAAAGAGGGACTCACCTGGTTCTGATAGTGAAAGCGATAGTGACGGAGATGGAAAGGAAGCACCTCCACCTCTCGATAGCGAGGAAGAAGGTGGAGGAGACGAGGAGGCGGCTGAGGAGATCGAGCCTGTAGTAGAAAAGAAAGGTTTTGTTTCAGTAGCAAATGAAAGTTCTGTACATAACTTGCCTGTCGAAGACATTAATATGCGATATGAAAATGATGATGATGGTGATGATGAGACTCGAGAACTTGATAGCGATTGTGAGGATCATAGAGGAAGCGATCATGACAGTGTCAGTGATGGCAGTAACCATGATGAAGCTGCCAAAGAGAACCAAGAGGAGGTCGAGAATGTTCAGGCTTCATTACATTCCCTGCACGTAGGAAAGTCCGATGAAAGCGAGCATTCTGATTCAGCAGGCGAAGTCAAGGGGGAAATGGAAGCGGAGAAACAAGACAGTGGGACTGGCGAGGGCGATGATTATGACAGTGATCAGAGAGTAGAGCTGGATTCAGCGGGCAATGCACCAGCTGAAACTATTATAGCTGCTGGGGAGAGCAGTGATATTTTGTCAGACAATGATTCCCAGGATGATGAACCCAAAGATGCCGAGGAAACAAAGATTCATGAGGATGCTATTGAGGAGGAGCAGAAGGAAAGGCAAAACGCGTTGTTAACTTCAGTTAAGAATGACCATGATGAGATGAGTAGTGAGAAGGAATGTAACGCTTCGCTTCAATTTGTCGATGATGATGATGATGATGATGATGATGATGATGAAAATGAACTGGAATGGGATGTGGAGGATTTTGATTTACCAAAACGCAAAAACACCAAGAAAACTAGACCAGCATCAAAGATTGATCCAGAAGGAGCAGAGGTTGAGAAACTGAAGAAATCTTTTATGGACACTTTAAGAAGTGAAGCAGAGCAGGCTAAAGTTGTTGAGGCTACGCAGAAAACAGGATCAAACAAAAAGAAAAAGCTAAATAAAGTAATAAACTCAAATAGTCGTAACATTGATCAGGGGCAAGAGAAAAGGGAGGTGGAGACAAAACCGGTAAAACCTGTTCACGAAGTAAAGAGAGTTCCCGGAACAGCCAGGCGGACAAAAGAAACTTCACCAAATGTTGGACACGCAAAAGATGAAAAGAAAACGATCAAAGGTGAAACAAATATTGCTGCAGTCAAAGTTTCAGATAATGCAACAAAAGCCTTAAGAACTAAATCCAAGGCGGCGGATAGCACTGTAGGGCAACGTGATGCACATAAAGTTTCGAAACAAAGGAAAGGTGTTATGGATACAACAAAGACATCCAAGGTCTCTGAAAGGATGCCTGAAGGAAAGCCATCAAAGGCAAAATCTTCATCTGTTTCGTCGCTTTCCACTGGTGATAGTGAACTAAAGGCAAGTCAAAAAGGGAAAGAATCGAAAAAGGCGAAACCAGTGGGTGATGTCGAAGCAGATTTAGTTTCTCAACGGACAGAAATTGTACAGAAACAAAAGGGAGAAAGAAAAGCCAGGAAAAGCGACAGTGATAACTCTCTTGATTCTTCAAGTTCATCGAGGAAAAAGTCACACAAAGCAGCTACTTCAGGTTCGGACTCCAAGCCTAGAAAGTCTAATGCTGCAAATTCACAGACACACAAGCGCGTAGAAAATACAGTAGAAAGAGAGGAAATGAAACAGTTAGAAAGTAAACAAGCTTCTGTGAAGTCTGTTTATGCAGAGACTTATCACGAAGATGGCTACCGTCTTGGAAATGCCGATAATAACGTAAAACCTACCCGAAACAAGCCGAAAAGCAGGCCCAAAAGTAATGGCCACTCTTCAAGTTCACATGAAACACTCTCAGTACACGCTAAACGGCATGATCATGGCACCAGGAACCACGAAGTCCACCACAGACATAGTGACCACGTCCATGAGAGGGGCAAGCACGTTTGGTTGTGCAGAGATGATGAGATTCATAAACTTATCGCACAGAAGGCTTCCTTGTTAAAGGAGTATGAATCGGGAAGTTTTGCTGGGAGAAGACTGTTTTCAGGACATAAGAGTCAAGTGAAAAGAGTCGACGAACCAGCGGATGTTCCCGATGTAGGATTCGTGGGCCGCAACAAACAGACGCGGAGACATGGCAACCGGCCGCTGAGTGAAGCCATATTTGACAGAACTCCTTACAGCTCACAGCGTAAAGACAAACGACTGTCACTGCAGCTCGATCATTCAGGAAGTTCATCAGACGAGGATGAGCGAACAAATGCAGCCGCTGGTTCGGCGAGAGGTGGCACGTTTGCTGTGGGATTAGCGGCTCGAAACAAGGAGCTGAAAGGCGTCGGCGACAATGAAACGGATCACGAAGAAACTTGCGAATACTGTGCCGCGGAAAAGGCAGCGGCGGCAGCTAAAGCCCAGGAACGGAATCCAGCTTGGGAGGGACCTCATCATCCACGAAATCTTTTACTCGGAGTTGTCTATTCGGCTAAGTACCTTGGCTCTTCACAAATTATGTCGCCCCAGTCTCCAAACAAAGCTGTGCGAATGGAACAAGCCCAGGAGGCCTTAGGACGAATTAAGGTGCCTGAAGGCGAGGAGCAGCCCACCACCGATATTGACCTTTTCATTTCCACTGAGCGACTTAAAATCGTCAACTCATCAACAAAGGAGGTGATGCTGGACCATGCCCTTCGAACAGTGTCATTTATCGCCGATATAGGAGATGTGCTTGTATTGATGGCCCGAAACCTCCCTGAAGAACACACCAATCAGGTTGCGTTAAAACCGACGCAGATTTTAGCAACAGTTGGAAGCGCGCAGACAGATCACAAGAATATCAAGATCACATGTCACGTGTTCCAGTCTCCAGAGGCGCAAGTTATGGCGAAGAGTATTGGTCAGGCGTTTAACGTGGCTTATCAAGAGTTTCTTCGACAGAACGGCTTATCTGATGAAGTAGTAGAGGAGGCCGAGTATAACGGCGTGTTAGAGGCACAGAAAATACTCGGCGAAGATTTGTCTTTGTTGTCCGACGAAAGCAGCTCCAAAGAAGTCATTGTGAACAAAAAGCCCCATGAGTATCTTGGTGTTATGATTGTGGAATCTGGCTGGGGATCCATGATTCCTTGCGCCATTGTTGCACATCTGGCAAAAGAAGGGCCAGCGGCCAAGTCTGGCAGGCTCAATGTTGGGGACCAGATCCTGTCGGTCAATGGAACCAGCTTGGTCGGCCTTCCCCTATTGGAGTGTCAAAACGTTATCAAGGGCATCCGTCCCAACACCAAGGTAGTGTTGAAAATTGTGTCATGTCCCCCTACTGTACAAGTTGTAGTCAATAGACCAGACACTAAATATCAACTGGGATTCAGCGTACAAAATGGCATGATTTGCAGTTTAATGCGTGGCAGTATAGCTGAGAGAGGTGGAGTCCGAGTAGGTCACAGGATAATTGAAATCAACGATGAGAGTGTTGTCGCCACCTCGCACCAGCACATTGTGGAGCTCTTAGCCACCACTGTGGGCGAGATTCGTATGAAGACAATGCCTGCCTCGATGTACCGGCTTTTAGTCGGTTTGGAGACACCGCAGCACATTTGA

Transcript

FUN_039773-T2

GGATGCAGATTCCGATGACCAGGAGATATCACTTTCAGGTGAAAAGAATATCACCAGAGATGCCTTGAGAAGAAAAAGAAAAGGAAAGAATGCCACCATGAGTAAAGATGGGCTGATGAAAAGTAGAGTGAAGCCTGGGAAAGCCGTTGTGGTATCAGGAACAAGTGCACGACCATCATATAGCGATACACCTGTCGATCTCTCAGCTGATGATAAGGATTTAGTCTTGGAATACTCAGATATGTATGAACCATCAAAGAGTGCTGGTTTTGTGGACATTCAAGATGGTGATGCCATTTCAGAAAGCAGTGATACGGAGATTGTCGCTCACACTGAGGAACAGGTGCGGTATGATAATAATGCTTCTTCAGGCGATGATGACAGTGATAATGATGACAACGACATCAATCATGGTCCACCACCACTTGATAGTGACGATGAGGATTCTGATGATGATGTTCAAGTGCTGACAGCTCCTGCTGTAGGAGCTAGTGCGGCACTGAGCTCTAGGAGAACTGTAGTGTCAAGTGAAAAGAGGGACTCACCTGGTTCTGATAGTGAAAGCGATAGTGACGGAGATGGAAAGGAAGCACCTCCACCTCTCGATAGCGAGGAAGAAGGTGGAGGAGACGAGGAGGCGGCTGAGGAGATCGAGCCTGTAGTAGAAAAGAAAGGTTTTGTTTCAGTAGCAAATGAAAGTTCTGTACATAACTTGCCTGTCGAAGACATTAATATGCGATATGAAAATGATGATGATGGTGATGATGAGACTCGAGAACTTGATAGCGATTGTGAGGATCATAGAGGAAGCGATCATGACAGTGTCAGTGATGGCAGTAACCATGATGAAGCTGCCAAAGAGAACCAAGAGGAGGTCGAGAATGTTCAGGCTTCATTACATTCCCTGCACGTAGGAAAGTCCGATGAAAGCGAGCATTCTGATTCAGCAGGCGAAGTCAAGGGGGAAATGGAAGCGGAGAAACAAGACAGTGGGACTGGCGAGGGCGATGATTATGACAGTGATCAGAGAGTAGAGCTGGATTCAGCGGGCAATGCACCAGCTGAAACTATTATAGCTGCTGGGGAGAGCAGTGATATTTTGTCAGACAATGATTCCCAGGATGATGAACCCAAAGATGCCGAGGAAACAAAGATTCATGAGGATGCTATTGAGGAGGAGCAGAAGGAAAGGCAAAACGCGTTGTTAACTTCAGTTAAGAATGACCATGATGAGATGAGTAGTGAGAAGGAATGTAACGCTTCGCTTCAATTTGTCGATGATGATGATGATGATGATGATGATGATGATGAAAATGAACTGGAATGGGATGTGGAGGATTTTGATTTACCAAAACGCAAAAACACCAAGAAAACTAGACCAGCATCAAAGATTGATCCAGAAGGAGCAGAGGTTGAGAAACTGAAGAAATCTTTTATGGACACTTTAAGAAGTGAAGCAGAGCAGGCTAAAGTTGTTGAGGCTACGCAGAAAACAGGATCAAACAAAAAGAAAAAGCTAAATAAAGTAATAAACTCAAATAGTCGTAACATTGATCAGGGGCAAGAGAAAAGGGAGGTGGAGACAAAACCGGTAAAACCTGTTCACGAAGTAAAGAGAGTTCCCGGAACAGCCAGGCGGACAAAAGAAACTTCACCAAATGTTGGACACGCAAAAGATGAAAAGAAAACGATCAAAGGTGAAACAAATATTGCTGCAGTCAAAGTTTCAGATAATGCAACAAAAGCCTTAAGAACTAAATCCAAGGCGGCGGATAGCACTGTAGGGCAACGTGATGCACATAAAGTTTCGAAACAAAGGAAAGGTGTTATGGATACAACAAAGACATCCAAGGTCTCTGAAAGGATGCCTGAAGGAAAGCCATCAAAGGCAAAATCTTCATCTGTTTCGTCGCTTTCCACTGGTGATAGTGAACTAAAGGCAAGTCAAAAAGGGAAAGAATCGAAAAAGGCGAAACCAGTGGGTGATGTCGAAGCAGATTTAGTTTCTCAACGGACAGAAATTGTACAGAAACAAAAGGGAGAAAGAAAAGCCAGGAAAAGCGACAGTGATAACTCTCTTGATTCTTCAAGTTCATCGAGGAAAAAGTCACACAAAGCAGCTACTTCAGGTTCGGACTCCAAGCCTAGAAAGTCTAATGCTGCAAATTCACAGACACACAAGCGCGTAGAAAATACAGTAGAAAGAGAGGAAATGAAACAGTTAGAAAGTAAACAAGCTTCTGTGAAGTCTGTTTATGCAGAGACTTATCACGAAGATGGCTACCGTCTTGGAAATGCCGATAATAACGTAAAACCTACCCGAAACAAGCCGAAAAGCAGGCCCAAAAGTAATGGCCACTCTTCAAGTTCACATGAAACACTCTCAGTACACGCTAAACGGCATGATCATGGCACCAGGAACCACGAAGTCCACCACAGACATAGTGACCACGTCCATGAGAGGGGCAAGCACGTTTGGTTGTGCAGAGATGATGAGATTCATAAACTTATCGCACAGAAGGCTTCCTTGTTAAAGGAGTATGAATCGGGAAGTTTTGCTGGGAGAAGACTGTTTTCAGGACATAAGAGTCAAGTGAAAAGAGTCGACGAACCAGCGGATGTTCCCGATGTAGGATTCGTGGGCCGCAACAAACAGACGCGGAGACATGGCAACCGGCCGCTGAGTGAAGCCATATTTGACAGAACTCCTTACAGCTCACAGCGTAAAGACAAACGACTGTCACTGCAGCTCGATCATTCAGGAAGTTCATCAGACGAGGATGAGCGAACAAATGCAGCCGCTGGTTCGGCGAGAGGTGGCACGTTTGCTGTGGGATTAGCGGCTCGAAACAAGGAGCTGAAAGGCGTCGGCGACAATGAAACGGATCACGAAGAAACTTGCGAATACTGTGCCGCGGAAAAGGCAGCGGCGGCAGCTAAAGCCCAGGAACGGAATCCAGCTTGGGAGGGACCTCATCATCCACGAAATCTTTTACTCGGAGTTGTCTATTCGGCTAAGTACCTTGGCTCTTCACAAATTATGTCGCCCCAGTCTCCAAACAAAGCTGTGCGAATGGAACAAGCCCAGGAGGCCTTAGGACGAATTAAGGTGCCTGAAGGCGAGGAGCAGCCCACCACCGATATTGACCTTTTCATTTCCACTGAGCGACTTAAAATCGTCAACTCATCAACAAAGGAGGTGATGCTGGACCATGCCCTTCGAACAGTGTCATTTATCGCCGATATAGGAGATGTGCTTGTATTGATGGCCCGAAACCTCCCTGAAGAACACACCAATCAGGTTGCGTTAAAACCGACGCAGATTTTAGCAACAGTTGGAAGCGCGCAGACAGATCACAAGAATATCAAGATCACATGTCACGTGTTCCAGTCTCCAGAGGCGCAAGTTATGGCGAAGAGTATTGGTCAGGCGTTTAACGTGGCTTATCAAGAGTTTCTTCGACAGAACGGCTTATCTGATGAAGTAGTAGAGGAGGCCGAGTATAACGGCGTGTTAGAGGCACAGAAAATACTCGGCGAAGATTTGTCTTTGTTGTCCGACGAAAGCAGCTCCAAAGAAGTCATTGTGAACAAAAAGCCCCATGAGTATCTTGGTGTTATGATTGTGGAATCTGGCTGGGGATCCATGATTCCTTGCGCCATTGTTGCACATCTGGCAAAAGAAGGGCCAGCGGCCAAGTCTGGCAGGCTCAATGTTGGGGACCAGATCCTGTCGGTCAATGGAACCAGCTTGGTCGGCCTTCCCCTATTGGAGTGTCAAAACGTTATCAAGGGCATCCGTCCCAACACCAAGGTAGTGTTGAAAATTGTGTCATGTCCCCCTACTGTACAAGTTGTAGTCAATAGACCAGACACTAAATATCAACTGGGATTCAGCGTACAAAATGGCATGATTTGCAGTTTAATGCGTGGCAGTATAGCTGAGAGAGGTGGAGTCCGAGTAGGTCACAGGATAATTGAAATCAACGATGAGAGTGTTGTCGCCACCTCGCACCAGCACATTGTGGAGCTCTTAGCCACCACTGTGGGCGAGATTCGTATGAAGACAATGCCTGCCTCGATGTACCGGCTTTTAGTCGGTTTGGAGACACCGCAGCACATTTGAACTGACAAAGCAGGAGATCGAATTGACACATACATGCTTCAAGCATGACCTCAATGAGTAGAACTGCTCCCCTGCTATGAGGAGTCGCTCAGTCCCTCGGATTCCCTTGTGCTTGCACACCAGACACACAACGTTTTGAAAAGTGTGTCGTGTAAAGTACAAGCCAATAGCAAATGGACACAAAAAGACAGTTTGAAAAAGTGTGTAATATGTCGATCGACGATCGCCATCAAAGATGTAGTTATCTTATAGTGCTGACTTCATTCTCGATTCTATAAATGCCAGGTAAATTTTCACGCGGTGTTTTAAATTTCGCCAACATACGTACTTTCACGAAAAGGAAAGGTGGTGTTAATCAAAGCTTTTCTTTTTATTTTATTAGTTGTCAGTGGACAACAAAGTCTTTGTATGGATGCAAAATGTTGTCCTATATATATAGCCAGTTGAAAAAGGCTTGTTATCCCTTCGAAAAACTTGGGCCTCTTGAATTTGTTCATAAGTTATAACCGGATTGCAAACGTCGCTCTTAAAATGTTTGCGCACATTTTTTGACCATGAGAATAAAATTGATTCCGCTAAATTTATAGTGTCTTTAACAATATTGTTACTTGAACCGTCAATACGTTTGGGGTCCGGAGTTTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99767	Amyloid-beta A4 precursor protein-binding family A member 2 OS=Homo sapiens OX=9606 GN=APBA2 PE=1 SV=3
O35431	Amyloid-beta A4 precursor protein-binding family A member 2 OS=Rattus norvegicus OX=10116 GN=Apba2 PE=1 SV=1
Q5RD33	Amyloid-beta A4 precursor protein-binding family A member 2 OS=Pongo abelii OX=9601 GN=APBA2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002950 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR051230 all species →	Family	Amyloid-beta A4 Precursor Protein-Binding	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12345 all species →	SYNTENIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0043197 all species →	Cellular Component	dendritic spine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_039773-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.