Gene detail

Detailed information of FUN_039875-T1 in Acropora pulchra

Genomic Location: ptg000031l:1181316...1200073
NR annotation: XP_044180833.1, conserved oligomeric Golgi complex subunit 7-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_039875-T1

ATGGATTTTTCCAAGTTCTCGGATGATAACTTTGATGTGAAAGAGTGGGTCAATTCAGCTTTGAGAATCCGTGATGATCGAACGCCTATTGATGCTCATGCTTCAAATTTGGTTATGAAGCTTCAGCTATTTATCCAGGAAGTCAACAATGCTTTGGAAGAAACAAGTACGCAGTCAGTGAATAATATTCCTAGGGTACTGCGGGAAATTGAGAGCATACGCCATGATGCGTCCCTTTTGAAAGAACAAATGACTGTAGTGAAGGAAGATATAAGAGCGGTTGAAGAAACCACTGCACAGTCAATGAAGATGTTGATGGAGCTAGATACAGTGAAATCAAGAATGCAGGATGCCTCAAGGGCCTTGCAGGAGGCAGACAACTGGACAGTGTTGTCTTCTGATGTGGATAAAGTATTTGAATCAGGGGATGTCAAGGCTATTGCAGCAAAGCTTGAAGGGATGCATCGGAGTTTAACTGTTTTACAAGATGTGCCTGATTATGCACAGAGACGCAGATTACTGGAGGGTCTGAAGAATAGACTGGAAGCTCTCCTGAGCCCTAAGATTGTAGCAGCTTTTAATAATCACTCACTTGATGACACTAAAGAATATGTTAAAATATTTACTAACATAGAAAGACTGGATCAACTTCAAAGTTATTATGTCAGATGCCACAAGGCAAAACTTCAAAAGACTTGGAAAGAAGTTCCAACTGAGGACCCCAACAAATCAATGTTGGAATGGGTGTCAAAATTTTATGATCTCATTCTCTCTACCTGGCACACGGAGGTGTCATGGTGTGCACAAGTTTTCAATGAACCTGGTTCTGTCTTGTGCACCCTCATCACTCAAACTCTAACTCATTTGGAACCATCATTGTCCTTTTGTATCAATGAGTTCATTACGAATCAATCAAACATCATAGAAAAGTTAATTGAGCTTAGAAGGGTTACTTTGCGATTTGCTCAGGGCCTAGAAACAGCAATTTCACAACAACAACAAGACAAATGTAGTACACTTTCCGTAGAACTCCTTGTGGATGCAGTTTTCTCGCCATATGTTCCATATTTGTTAGACTATCCTACATTACAGCAAGCATTCCTCACAGAGCAGTTACAAGCAATGCGTCTGCATGCCGATGGTTTAATGGAAACTGCAGGATTCATGGCTGAATCTGTGGAGAAAATATTTCATCTTTCAGAGCAGGCTGTTGATTGTTGTATCAATTTAACTGATGGTTATGGAATTCATGGGCTTTGTCGTGTCCTGGAGGAATTCTTTGGTGCCTATGCTGGGCGGTTGGATGAATGTATTAGCATGTTACGGAAAGAGTGCTCCTTAGATGCAGATCCTAAGATGGCAGAATTACCTTCTGAAGGGATCAGTGAGGACTGGACTATGTTTCAAAATGCATTTCGCCTTATTCAGATTTGTGGTGATTTGCTTTTGAAAATGGAAATTCTCGATGAAAGGTTGCTGGCGGCAATTTTCATGTTTGAGGAGGATTCACATACACCGGAGAAATCGCAGGAGAAGTCAGCTTCTTCGCCAAGGCCTTTCCGTTGGTTCAACTATTTGCAGAAGGAAAGACCTGCTGAGTTCAATGCATTGAATGAACTAAAGCAAAAACTTAAATCAGCTGGTGAATCGGCGGTAGTCCTGCCTGTTGTTGCTGATCAGTTCCAATCGCTGAACGAAAGAGTTCATACATTTGCATTTGACGTCATCTTCATCCAAATACGCCAACAGCTCGCTCAGACTCCAAAGTTACAGGTTTGGTCAGCGAAATCTCCGGAATCTGGGGCAGCTTTGAGCGATGAACTTCCTACATTCAGCTTGTCACCGCTAGGATACATTACACACATCGGTGACTATTTACTGACGCTGCCACAACAACTTGAACCTTTTATAACACAAGACAACCCTGGCTTAGCAGCTGCAATGAAAGCTGGAAATTTACCATTTCCAGACATACAAGACCAAGATGAACACAACCCTGGTAGCTACTGGCTGGGATCCATCGCTCGTGGCACCATGCACGTATATACAGAAAGTATCTTGCGGATTCACGAGTTGACGCCGTATTCCACCCAACAGCTATTGGCTGATATAGATTATTTCTGCAACGTACTTGAGGCGCTCGAAGTGACCCCAAGTCAAATATTGACGCACATTAACGTCTTACTTAAAGCATCCCCAGATAAATTCCACGAGGTTGCCACTGATCTTGGCGTTGAGGATCGTATAATGGTGGCAATAGCTGGCATCAGAAATATTCGCTGA

Transcript

FUN_039875-T1

ATTTATTGTGAGTTGGCGGAGTTGTTGTTTGTGTTTATTTTGATTTTGATGAAATCAGCATGGATTTTTCCAAGTTCTCGGATGATAACTTTGATGTGAAAGAGTGGGTCAATTCAGCTTTGAGAATCCGTGATGATCGAACGCCTATTGATGCTCATGCTTCAAATTTGGTTATGAAGCTTCAGCTATTTATCCAGGAAGTCAACAATGCTTTGGAAGAAACAAGTACGCAGTCAGTGAATAATATTCCTAGGGTACTGCGGGAAATTGAGAGCATACGCCATGATGCGTCCCTTTTGAAAGAACAAATGACTGTAGTGAAGGAAGATATAAGAGCGGTTGAAGAAACCACTGCACAGTCAATGAAGATGTTGATGGAGCTAGATACAGTGAAATCAAGAATGCAGGATGCCTCAAGGGCCTTGCAGGAGGCAGACAACTGGACAGTGTTGTCTTCTGATGTGGATAAAGTATTTGAATCAGGGGATGTCAAGGCTATTGCAGCAAAGCTTGAAGGGATGCATCGGAGTTTAACTGTTTTACAAGATGTGCCTGATTATGCACAGAGACGCAGATTACTGGAGGGTCTGAAGAATAGACTGGAAGCTCTCCTGAGCCCTAAGATTGTAGCAGCTTTTAATAATCACTCACTTGATGACACTAAAGAATATGTTAAAATATTTACTAACATAGAAAGACTGGATCAACTTCAAAGTTATTATGTCAGATGCCACAAGGCAAAACTTCAAAAGACTTGGAAAGAAGTTCCAACTGAGGACCCCAACAAATCAATGTTGGAATGGGTGTCAAAATTTTATGATCTCATTCTCTCTACCTGGCACACGGAGGTGTCATGGTGTGCACAAGTTTTCAATGAACCTGGTTCTGTCTTGTGCACCCTCATCACTCAAACTCTAACTCATTTGGAACCATCATTGTCCTTTTGTATCAATGAGTTCATTACGAATCAATCAAACATCATAGAAAAGTTAATTGAGCTTAGAAGGGTTACTTTGCGATTTGCTCAGGGCCTAGAAACAGCAATTTCACAACAACAACAAGACAAATGTAGTACACTTTCCGTAGAACTCCTTGTGGATGCAGTTTTCTCGCCATATGTTCCATATTTGTTAGACTATCCTACATTACAGCAAGCATTCCTCACAGAGCAGTTACAAGCAATGCGTCTGCATGCCGATGGTTTAATGGAAACTGCAGGATTCATGGCTGAATCTGTGGAGAAAATATTTCATCTTTCAGAGCAGGCTGTTGATTGTTGTATCAATTTAACTGATGGTTATGGAATTCATGGGCTTTGTCGTGTCCTGGAGGAATTCTTTGGTGCCTATGCTGGGCGGTTGGATGAATGTATTAGCATGTTACGGAAAGAGTGCTCCTTAGATGCAGATCCTAAGATGGCAGAATTACCTTCTGAAGGGATCAGTGAGGACTGGACTATGTTTCAAAATGCATTTCGCCTTATTCAGATTTGTGGTGATTTGCTTTTGAAAATGGAAATTCTCGATGAAAGGTTGCTGGCGGCAATTTTCATGTTTGAGGAGGATTCACATACACCGGAGAAATCGCAGGAGAAGTCAGCTTCTTCGCCAAGGCCTTTCCGTTGGTTCAACTATTTGCAGAAGGAAAGACCTGCTGAGTTCAATGCATTGAATGAACTAAAGCAAAAACTTAAATCAGCTGGTGAATCGGCGGTAGTCCTGCCTGTTGTTGCTGATCAGTTCCAATCGCTGAACGAAAGAGTTCATACATTTGCATTTGACGTCATCTTCATCCAAATACGCCAACAGCTCGCTCAGACTCCAAAGTTACAGGTTTGGTCAGCGAAATCTCCGGAATCTGGGGCAGCTTTGAGCGATGAACTTCCTACATTCAGCTTGTCACCGCTAGGATACATTACACACATCGGTGACTATTTACTGACGCTGCCACAACAACTTGAACCTTTTATAACACAAGACAACCCTGGCTTAGCAGCTGCAATGAAAGCTGGAAATTTACCATTTCCAGACATACAAGACCAAGATGAACACAACCCTGGTAGCTACTGGCTGGGATCCATCGCTCGTGGCACCATGCACGTATATACAGAAAGTATCTTGCGGATTCACGAGTTGACGCCGTATTCCACCCAACAGCTATTGGCTGATATAGATTATTTCTGCAACGTACTTGAGGCGCTCGAAGTGACCCCAAGTCAAATATTGACGCACATTAACGTCTTACTTAAAGCATCCCCAGATAAATTCCACGAGGTTGCCACTGATCTTGGCGTTGAGGATCGTATAATGGTGGCAATAGCTGGCATCAGAAATATTCGCTGACTTGTTCGTTTAAACGTACATCTTTGCGTCTGAGGGGAATGAAAGAAGCTCTGTGTTAGTTTGTAGCTGGTATATACTTTTACAAACAACTTAACCCGATTCTACCCTTGTAAGAATGCTCCGTTGCCAGTTGTGGTTAAATTAATATTGTTATGCACAAAGAATAGAGACATTTCGTATTTACAAACTCTGGCGCCAAATTTATTTTGAGAATCAAATTTTCTAACCACAGTGAAAGAAGTCATTGTTTAAAAATCCTATCGGGCTCTGTAAACACATTAATAAAAACAATAGCTGGTGTAACGAGAAATATCGCTTTTGCCCTTGGCAAGGAATAGGCAAATGTCCTACTTGGGCGATGACCGTTTCGTTCCTAAATTATAAAAGTTACTGAGTTTGATTAGAATTCAATTCATTGATGTTCTGCTCTACAAATGCAGGAAAAGAAAAAACGAAGTGCCACATAGTAGGTCCCGCTGAGCGTAATAGTTTTTTTTTTTATTAGACGCAGTAATGGCGTTAAAAAGAAAGAAACATGATTTATATTTGAAGAGAAGGGATTCATTTCTGAAGAACTGTGGTGTGGCGTTAATGGAGAAGTGAAACAAACATTTTGTGTATCAAACAAGCTCACCGGGTGTTAATGGTCAAAATTCTAACGTATGACGATTACAAAGCTAGCTGACGTTTCGAGCGTTAGACTATCCTCGTTCGTCCTGACAAAGGGCTAAAATTCGCCGACTTTGCAAAACCATCTTACTGTAGTCCACTTAATAGAGACGTTTAATACCAGATTAAGTAATTACGAATGGCTCATTTAAATGAGGAAACAAATCTAACTTAAACTAGCTAAACTAAGTAAACTGCGATCAATTTATTACTGTGGTCGTGGCAATGATACGAAGCGAAAAGAGTTCAAATAAGCGACTTACAGCTTTGTAGATTATTCAATGGAGAGCTTAAGCAAGCGACGTTTTTGAGCCACGGACCGAAACCGAAAGTGAATATTTCGCATGCCAGGACAGTGGTCTCTCGCAGATTTCCAAACCAGTCGTCTCTACCAGGGAAAAGATACTTTAAAATATAGATATGGTAGTGTCAAATAGGAAAACAGCTCACTTCCGGTTGCCGTCCGTGACTGTAAAAAAAACGTAACGACAGCGAATGCAACTAGAACGTCCGTTTTTTCAATGAGGTACATGTTTTTGGCCTTTTATTTGTGAAACGATGACGTCAAATGACCAAATTTAAAGTCCTGTGGGAGACGTCAACACATGACGCTTAAATGTGATGGTGCTTTCTGATTTTCTAATACGTCCGTGCCGGTTTAATTCGTAGATAGTTAATGCTCGTTTTTGAGAATCATGAAATTCACTGATGTAGCAGGGTATTGTGCTGTAACATTGGCCAGCACTTTTTGTGATGTTCCTTGTGTATTTAAATTCGTTTTTCAATCAAGAGACGTGCGACCTAGATCAGAGCTGTATTTATTTAAACTTAAGTCTCAATAAACTGGAAGTTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T1G7	Conserved oligomeric Golgi complex subunit 7 OS=Rattus norvegicus OX=10116 GN=Cog7 PE=2 SV=1
Q3UM29	Conserved oligomeric Golgi complex subunit 7 OS=Mus musculus OX=10090 GN=Cog7 PE=1 SV=1
A2VDR8	Conserved oligomeric Golgi complex subunit 7 OS=Bos taurus OX=9913 GN=COG7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004820 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10191 all species →	COG7	Golgi complex component 7 (COG7)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019335 all species →	Family	Conserved oligomeric Golgi complex subunit 7	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21443 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20294	COG7; conserved oligomeric Golgi complex subunit 7	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.