Detailed information of FUN_039885-T1 in Siderastrea siderea

Genomic Location: contig_48:5394184...5436385
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12166
all species →		Piezo_RRas_bdgPiezo non-specific cation channel, R-Ras-binding domainFamilyInterproscan
PF15917
all species →		PIEZOPiezoFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031334
all species →		DomainPiezo non-specific cation channel, R-Ras-binding domainInterproscan
IPR027272
all species →		FamilyPiezo familyInterproscan
IPR031805
all species →		DomainPiezo domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47049
all species →		PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008381
all species →		Molecular Functionmechanosensitive monoatomic ion channel activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22128PIEZO1_2, FAM38; piezo-type mechanosensitive ion channel component 1/2-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_039885-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
10TPM > 0
7Conditions
15.9Max TPM
0.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 1 0.17 3.42
holobiont · control.pH_high.temp 20 1 0.19 3.85
holobiont · control.pH Control.temp 19 2 0.37 4.83
Whole organism 4 4 11.25 15.89
unannotated 1 1 6.51 6.51
live coral tissue/skeleton 1 1 13.50 13.50

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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