Gene detail

Detailed information of FUN_040303-T1 in Acropora pulchra

Genomic Location: ptg000031l:6727137...6736099
NR annotation: XP_020621107.1, neuronal acetylcholine receptor subunit alpha-7-like [Orbicella faveolata]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_040303-T1

ACAGCAAAAAAAGCATGTGTTATCGTTCTGGCCACTTAAAATTTCTAAATTCTCCAAAGAAACGAATTCTTCGCGATGGCGCGACAAGGAAGTAGTTGTGACCGCATTCTTACAAAATATCTTGAGGTGATTTTCATTTGTTGACAGTTCCTGCCGATGACAAAATATTTGGGTTTTCATCGCTGGTTGTGAATATATTCTGCGTGTTGAGATCTTGGATTTTGTCAAAAATGCTTAAGACAACGGAAAAACTTCTTTTTTACCTGCTGTTCCACGTTAATTTAATAGTTGGTACTAAACAATACTATGAAGACTTGGAGAGACTCCAGACGGACCTGTTTCTTAACTACAGCACCAACATCATTCCTCAGAAAGTAAAAGCTACCCCTGTAGAAGTTAAGTTTGACATCGCGCTCAATCAAATAATTGATTTGGATGAGAGACTACAAACTATGACCACTATCGTCTGGGTACGACTATTTTGGAATGACTTTAGATTAGAATGGAATAGTTCCAGTTATGGAGAAATAACATCATTCGTGACATCTTCCAAGAACCTCTGGCTTCCTGATGTCACATTGTACAACAATGCAAATGACAATTACAATAAAGAGAAAGAAGAATATTATGGTCTCACCATAAATTCAACTGGTGATGTAGGCTGGTTCTATCCTACAATATTCAAGAGTTCGTGTACAATAGACGTCACTTACTTTCCATTTGATGACCAGAAATGTGTTCTGAAGTTTGGCTCGTGGTCTTACAATGCCCTGAGTCTGAATATATCCCACAACGGACCTGGAGACACCGAAGCGTTTACTGATAACGGAGAATGGGTACTAGTTGGGATGCCTGTGCGCAGATTCGTCACAAAGTACCGTTGCTGTCCAGAGCTATATCCCTTCATCACTTACGATATTATCATTCGTCGCCGTACAATATACTATATCCTGAATTTCCTGACACCATGTGTCCTTATGTCTGCTTTGACAATCCTCGGATTTTTCCTACCGGTGGAGTCTGGGGAGAGGATGAACGTTGGAGTCACGGTTCTTTTATCGTTAACTGTTATCCTTCTGTTACTGGCCGAAGAGCTTCCGGCAACGTCCGAAGTTGTGCCGCTGATTTCTCGGTACTACACATTAACGATGGTTAACGTATTCATCTCCATCGTTTTTACCTGCGTCGAGCTCACATTTCATCATCATGCACCAACTCCTATGCCGGCCTGGATGCGAAAGTTTATTTGTCAATGGTGCGCAAGCGCGTTGCGAGTTAAGAGGAATGGCAACGAAAGTGACTCCTGTGTTTTGACGAAGAGATGTTTTAAAAATCACAGCATTAGGAGCCATTTCCTTGGTGAGCATCTCTATGATGGCGACAGTGCTGAGGCTGCAGCGACAAATCCTTTCTTGAACGCGAATAATCATAAAAACAGCGCTGATCTGCCTAATTCTGAATCAGCGGTATCCGTTCAATTAAAGAGGTTGGACGATAGAAATCCAAATTTACGAAAACGAGGCGGGAGGCAATCGGAAGCCTTAGATATTCTGGTTAAAAGGAGAAAGAAAGACGATGAAAAAGAGAAGCATCAAGAGGAGTGGCGTTTTGCCGCTAAGGTTCTCAATCGTTTATTTATGTGGATTGTGGTGCTTTTAGTTGTGTTTAATTGCCTCAGCGTCTTATTCTCAGCTCCAGTTAAAAATCTTCAGTGATTACAGTCCAGCAATGCCCAGTTTCTGCCACCTGTCGCACTGACTCTACCCGAACCTCTGCAAATCAGTGCACGGTCACCTTGGCTTCGTGCTTATGACCTGATAGCGATCTTGTTGGTTAAACGCTCCGTGTTTTATAGGTCCCTTTTTGTCATTTTACAATTCATCATAATGATTATATCATAAGGAATAAACCAAAGTGGCTCCAGCTTCGAAAATTGATTCGGGACTAGATTGTATTAGTTTGGTCTGTAATTGTTATTTAAAAGCGTATATGCTGAGAAAATTAAGAAAACAACAGTCGACAGAAAAGGAAAGTGAAATGCTAGATAAAATCATTTAGGCATACGATTCTACCGAATACTTAATTGCATCTACCCAAAACACGTAAAAATAGAAATGGCAGTTAATTTGTTTTTTAATCGCACGCCGGGTTCCGCACCTTAGAGTACTAGAGTCAACAAAAGAACTTATATACTTAAATAATTAATTAATATAACAGAGCAATTGGTCAATTTTGCAAAACTAGTTGCCGGGGTCTCCCAATAGGTCCCCAAAACAGAGAAACATGAGGCAGCCTTGAAGATAGGAAGAAAGGGGTTAAAGACAAAATATCCCAGGGAACATGTACCAGTCCCTGGAAGATCCACCTTTCTTTTTAAACTTTTCAGAAGACAATCAGCGTGTTTTTTTCATCGAAAACAGTTATTGGGGAAGAGATGAACAATTTGTAAATATGAAGGTCATTTAATGGGACCGCACTGAATAAAATCGGGGAACTATGTTCTGAGTGAAAACAAAGCATAAAATCATTGAAAATCCAATAGCAATATATTGTTGTCGATCTCAAAGAAATATATCATGGTTTTAAATTAAAAGAACTTTAAATATATTATTAAAGATAGGATGTCAAAATATATCAGTAAATAAAAATTCAACTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22770	Neuronal acetylcholine receptor subunit alpha-7 OS=Gallus gallus OX=9031 GN=CHRNA7 PE=1 SV=1
P54131	Neuronal acetylcholine receptor subunit alpha-7 OS=Bos taurus OX=9913 GN=CHRNA7 PE=1 SV=1
P49582	Neuronal acetylcholine receptor subunit alpha-7 OS=Mus musculus OX=10090 GN=Chrna7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005542 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02932 all species →	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006201 all species →	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR006029 all species →	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR018000 all species →	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR002394 all species →	Family	Nicotinic acetylcholine receptor	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18945 all species →	NEUROTRANSMITTER GATED ION CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0022848 all species →	Molecular Function	acetylcholine-gated monoatomic cation-selective channel activity	Interproscan
GO:0045211 all species →	Cellular Component	postsynaptic membrane	Interproscan
GO:0005231 all species →	Molecular Function	excitatory extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0030594 all species →	Molecular Function	neurotransmitter receptor activity	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0050877 all species →	Biological Process	nervous system process	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_040303-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.