Detailed information of FUN_040439-T1 in Siderastrea siderea

Genomic Location: contig_50:2167864...2170837
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15162
all species →		SCREProtein SPO16 homologFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027857
all species →		FamilyProtein SPO16 homologInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31408
all species →		HYPOTHETICAL PROTEIN LOC689986Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005694
all species →		Cellular ComponentchromosomeInterproscan
GO:0007130
all species →		Biological Processsynaptonemal complex assemblyInterproscan
GO:0007131
all species →		Biological Processreciprocal meiotic recombinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_040439-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_040439-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
45TPM > 0
7Conditions
1,043.9Max TPM
132.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 9 135.23 702.22
holobiont · low.pH Control.temp 20 13 182.47 605.38
holobiont · control.pH_high.temp 20 11 141.62 540.60
holobiont · control.pH Control.temp 19 7 108.43 1,043.95
Whole organism 4 4 4.91 5.76
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 1 3.31 3.31

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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