Detailed information of FUN_040615-T2 in Siderastrea siderea

Genomic Location: contig_50:4952458...4961060
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08704
all species →		GCD14tRNA methyltransferase complex GCD14 subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014816
all species →		FamilytRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14Interproscan
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR049470
all species →		DomaintRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12133
all species →		TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0030488
all species →		Biological ProcesstRNA methylationInterproscan
GO:0031515
all species →		Cellular ComponenttRNA (m1A) methyltransferase complexInterproscan
GO:0160107
all species →		Molecular FunctiontRNA (adenine(58)-N1)-methyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K07442TRM61, GCD14; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunitEC:2.1.1.219
EC:2.1.1.220
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_040615-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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