Gene detail

Detailed information of FUN_040694-T1 in Acropora pulchra

Genomic Location: ptg000031l:12005192...12038196
NR annotation: XP_029211526.2, semaphorin-2A-like isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_040694-T1

ATGATTTACAAGTATTTTATGGGGCTGTTACTTACTGTTTTACATTCTACACTAAGCAGTTCAGATGTTCTTTCCTACAACAAATGCAGAGATTGTCTCAGGTTCCCCTCTAATGGAACATTGGTATCACGTGTCGAAAGAATCCTGATTGATGAAAAAAATAACAAACTAATTGGTGGTGCAATGAATGTCCTATTCCGGCTTGAATTATCCAACATGAAAGTGTCATCAGGGGGAAATGATTCTGTATCCCTACCACCCAGCCAGTCAGCATTACAGGATTGTTTGAAAGGATTTTCAGAGGTTCATTGCCAAAATTATATAAAGACATTACTGTTTGATCAAAATGGACTAATATTTGCTTGTGGGACATTTTCATTGGCTACCAGGTGTTGGAGGTTTCAGAGGGACAAAGCACTGAGTCCTTTACCTTCTGTAAATGGCATAAAAATTGATGGAACAGCTCCACGTCATGGCCATCAACAAAATATCACTGCTACCTTTACAAGTGATTATTTGTTCACCGGAATCAACATTGGTAGTGGCACAAGGCAATCAGCAGTTTACAGGAGCACTGCGGATCCTACAGATTCTTCAAATACTCTGGTATCAGATTTGAGCAATCAGATGGTTTTAAAAGATGCCAACTTTGTATCATCATTTGAATATAAAGACAATTTTGTGTATTTTTTTCTGAGAGAAAAAGCTGTTGAAGAGAGGAAGGACATAATTTACTCAAGAGTTGCCAGAGTTTGTAAGTATGATCAAGGAGCTGATAAATATATTCTGAAAGGCAAATTCACATCATTTGTGAAAGCAAGATTATTATGCTCAATTCCTGGAGATATACCATTTGACTACGATCAAATTCAGTCTACTGTGCTTTATACTGACCCTGTCACAAATGAAGATTTTGTTTACGCGGTTTTTACCACACCACCACTTGGAGCGCCTGGGTCAGCTGTCTGCAGATATAGCATGAAGTCACTTCAGGACTTATTTGAGAAAAGTCAATACTTGGAATTGACAAGGATCAGAGGTGAAGATGCTGTGGAGTTTTGGAAACCAGTGTCACCTATGAATTTGACTGTTGTTCCAGGAAGGCCAAAGTGTGACAGCACTCTTGACACCAGGAAATATCAAGTGGCTGTGTATACATTTGCTAATAGACACAGTCTATTAGCTGATTATCTTCAATCAAAGCCTCTCTTTACCCGAGCAGATACAAGATTCACAACCATTGAGGTAGATCATGTTAAGGAAAGCAGTAGGGCAGTTGTGCCTGTGATGTTCATTTCATCAGACAATGGAACTGTGTTCAAAGTTTTCAACAACAAATCTGGCGGTAACAATCCTGTTATTTTAGAACAGATCAATCTTTTTAAGTACCCAGGTGTTATCTACACCATGAGACTATATAAGGGGGCTGTTTACATTGGAAGCGCGTCAAGTGTCGTCAAATTACCTGTACAACATTGCAATCGATACCAGATCTGCAGGGAGTGCGTTGCTACTTTGGACCCATACTGTGGTTGGAGCAATAACAAATGCACAACATACGAAAACAAAAAAGAAAATCGCTGGGCGCAGGACGTTATTCATGGGAACTTCACCAAAGTTTGTCCTCAAGAACCCCCAACATGTTTACTGAGCATTATTAAGAAGCAAGTAGGAGGTACAACTACATTGGCCTGTCGCGTTCAAAATGGAATACCGCTTCCTAAAGTGACTAAATGGACTAAAGACTCAAAAGATTTGCCGGTTGGTGGTGCAGATTACCAAATCAAACCAGGAAAGGACCAGTATCAAGGATACCTTGAAATCCACAACTTTGGCATCAATAATCTTGGTGTTTATGCATGTGTGATCGCCAACGATCTGGGTTCTTTCTCTTGCGCCATGAACATCAGTGGAACATTACCAATTGTATCATCAGCCCTCGTTAAGATCAATGGTTCATCTTTGTTTGTTTGCAATGCCACTGGTCTACCCACCCCACGTGTTGCTGTACACAAAGTGATTAGTGGTACCACGCGTGTGATCAACCGGCGTCAAGTTCCAATCAACGTAGACTCCGGTCAGCGGGTGTATTATTGCACAGCTCAGAATCAGTTTGGATCATCCTTCAGCAAAGCTGTTACTTTAAAGGACAAGCAAGTGAAGGCAGAGATTAGAATCACAAATGAAGAATGGAGTTCCGAGCTTTTGGATGAAAAATCGGAAAAATACAAAACCTTGGCGGGTGAAATCCGAACTGCGGTACAAGACATTTATAGGTCAAACCCCGGCTTGGTTGGATTTAAAGCGATCACATTTAGGTATGGTGAAAACAATTACTAA

Transcript

FUN_040694-T1

TATCCAAGCGCTGCTTTATCACGTGACCTACCCATTGTTCAACGCCTGTATACGTATTACGATTTCCGCTAAGTGTGTTTTTGTAGACATCATCTTTTGCTCCAGGGCATGCTTTTACGAGGATTAATTGAAGGCTAACACGGACAACTCAAGCCTCTGATATTTATGTTTGGCTTTACTCGTGGAGTTTCGTGAAATTTGTGTTCCTGGAGGCTTCGAATCGTTGCAGTAAGCAGCTACGTGACGTTTGAATATTGTGTTAGAGGGGAGAAAAAGCTTTGAATAGCAGGCTTGTAAATTTCATCAAAGCTGTCAAATATGAATGTTGGCTACTGTTCTTGAAGTAAGATTTCAATGACTGCTTGATATGATCCTTTGCAGGTATCATGATTTACAAGTATTTTATGGGGCTGTTACTTACTGTTTTACATTCTACACTAAGCAGTTCAGATGTTCTTTCCTACAACAAATGCAGAGATTGTCTCAGGTTCCCCTCTAATGGAACATTGGTATCACGTGTCGAAAGAATCCTGATTGATGAAAAAAATAACAAACTAATTGGTGGTGCAATGAATGTCCTATTCCGGCTTGAATTATCCAACATGAAAGTGTCATCAGGGGGAAATGATTCTGTATCCCTACCACCCAGCCAGTCAGCATTACAGGATTGTTTGAAAGGATTTTCAGAGGTTCATTGCCAAAATTATATAAAGACATTACTGTTTGATCAAAATGGACTAATATTTGCTTGTGGGACATTTTCATTGGCTACCAGGTGTTGGAGGTTTCAGAGGGACAAAGCACTGAGTCCTTTACCTTCTGTAAATGGCATAAAAATTGATGGAACAGCTCCACGTCATGGCCATCAACAAAATATCACTGCTACCTTTACAAGTGATTATTTGTTCACCGGAATCAACATTGGTAGTGGCACAAGGCAATCAGCAGTTTACAGGAGCACTGCGGATCCTACAGATTCTTCAAATACTCTGGTATCAGATTTGAGCAATCAGATGGTTTTAAAAGATGCCAACTTTGTATCATCATTTGAATATAAAGACAATTTTGTGTATTTTTTTCTGAGAGAAAAAGCTGTTGAAGAGAGGAAGGACATAATTTACTCAAGAGTTGCCAGAGTTTGTAAGTATGATCAAGGAGCTGATAAATATATTCTGAAAGGCAAATTCACATCATTTGTGAAAGCAAGATTATTATGCTCAATTCCTGGAGATATACCATTTGACTACGATCAAATTCAGTCTACTGTGCTTTATACTGACCCTGTCACAAATGAAGATTTTGTTTACGCGGTTTTTACCACACCACCACTTGGAGCGCCTGGGTCAGCTGTCTGCAGATATAGCATGAAGTCACTTCAGGACTTATTTGAGAAAAGTCAATACTTGGAATTGACAAGGATCAGAGGTGAAGATGCTGTGGAGTTTTGGAAACCAGTGTCACCTATGAATTTGACTGTTGTTCCAGGAAGGCCAAAGTGTGACAGCACTCTTGACACCAGGAAATATCAAGTGGCTGTGTATACATTTGCTAATAGACACAGTCTATTAGCTGATTATCTTCAATCAAAGCCTCTCTTTACCCGAGCAGATACAAGATTCACAACCATTGAGGTAGATCATGTTAAGGAAAGCAGTAGGGCAGTTGTGCCTGTGATGTTCATTTCATCAGACAATGGAACTGTGTTCAAAGTTTTCAACAACAAATCTGGCGGTAACAATCCTGTTATTTTAGAACAGATCAATCTTTTTAAGTACCCAGGTGTTATCTACACCATGAGACTATATAAGGGGGCTGTTTACATTGGAAGCGCGTCAAGTGTCGTCAAATTACCTGTACAACATTGCAATCGATACCAGATCTGCAGGGAGTGCGTTGCTACTTTGGACCCATACTGTGGTTGGAGCAATAACAAATGCACAACATACGAAAACAAAAAAGAAAATCGCTGGGCGCAGGACGTTATTCATGGGAACTTCACCAAAGTTTGTCCTCAAGAACCCCCAACATGTTTACTGAGCATTATTAAGAAGCAAGTAGGAGGTACAACTACATTGGCCTGTCGCGTTCAAAATGGAATACCGCTTCCTAAAGTGACTAAATGGACTAAAGACTCAAAAGATTTGCCGGTTGGTGGTGCAGATTACCAAATCAAACCAGGAAAGGACCAGTATCAAGGATACCTTGAAATCCACAACTTTGGCATCAATAATCTTGGTGTTTATGCATGTGTGATCGCCAACGATCTGGGTTCTTTCTCTTGCGCCATGAACATCAGTGGAACATTACCAATTGTATCATCAGCCCTCGTTAAGATCAATGGTTCATCTTTGTTTGTTTGCAATGCCACTGGTCTACCCACCCCACGTGTTGCTGTACACAAAGTGATTAGTGGTACCACGCGTGTGATCAACCGGCGTCAAGTTCCAATCAACGTAGACTCCGGTCAGCGGGTGTATTATTGCACAGCTCAGAATCAGTTTGGATCATCCTTCAGCAAAGCTGTTACTTTAAAGGACAAGCAAGTGAAGGCAGAGATTAGAATCACAAATGAAGAATGGAGTTCCGAGCTTTTGGATGAAAAATCGGAAAAATACAAAACCTTGGCGGGTGAAATCCGAACTGCGGTACAAGACATTTATAGGTCAAACCCCGGCTTGGTTGGATTTAAAGCGATCACATTTAGGTATGGTGAAAACAATTACTAATTTACCGGAAAGGGAAAATGTGTTATCACGTCGCAAGTTCTTGTACCAAAAGGAGAGGTCAGAAAAGGATTGCAAAGAGTTACGAAATCATTACTTTATAAGTTGAATAGAGGAACATGGTTGCTTAGAACACTTGCTAGCAATTTTTGAGCGCAACTATCATTGAGAGGGAAAGGAAAACCAATGAACTTGTTGCAGACTCCCATTTCACGCACGTAAAATGAATGTGGCATTTACGAAAGAGCACTGCGAAAAATATTGAATGCAAAGTCCTCGGACAATACCAAATCTTTTGTGGATGCAAGCACTTCTCTGAGTTCTAGCAAAAAGGGTGAATGATGCGGCTTTTGACATACAACAATGATTCGATCCAATTTTCGGTGAGTAAAGGCAAAGCACTTTTTCATTTAGGCATGGATAACCTGCAAGCAGGCTCTTCCTTTGAAATGGCGTGCGGTCGAAATATAGGGGCTTGGTGACTAGTTTCGAAACTGTAGGGATCGCTTCAGGCACTTCCTTTCGAAACTAGTCACCTAGCCCCTTTATTTCGTCTGCGCGCCATTTCAACCGATAAGCCGGCGTGCAGACATGGAGGACTTAATTTTTCATTCAGTTATGTTGAGCTCACGAATGGTAAGTATCATTTGGTTTTATGGTTATTGCACTTCTTGCAAATCGATTTGTTCAATTTTCACAGCAAAGGAAGTGTTATCTGTAAATTGACGTTGATATTTGCTGCTGCTCCTTCAAACAAGAATGCTGACTTGTTAGCCGATTTGCAGAAAGAAGTATCTTCTGGCAAAGTGGGATATTTCACTGTGGATAAGTCTCGCCCAGTTAATGTGGAACCCGACGAAGAACCTCCCACGTCACTGCGAATGATAGTGTCAATGGATAGGGCCCTGTTTGCTGCGGGTATAATAACTGGAGTCTTGTTAAGCCTTATTTTGGGAATTCTTCTTGGAGTCAAGTTTCATCACTATGTTATCAGGAAGTGTAAGCGGCCTTTCAGTGACAGCACTGATAGCTCCGCAAAAAACAAGACAATCGAAGGAGTAAAATATACTAAGTCTCCTCCCAGGGATGAAATTTTTACGAGAAATAAAGACAGTGGACAAAGCAGTAAGAATCTGTTGAAAAAGAAAAGAAACGTTCCAGTGGAAGATGGCACTGACAGTGATGACTCCACTGCTGGGACGATAGCTACGCAGAAAAATAACCCGTCTCCTACAAAATCGATATCACCAACTGCAACTATTGCAGCAAAACTGGGAAAAATGAAACCTACACTAAATAATGGAAAGGTATCTAAAGAAGTGTCGACGTGACTCGAGGCAACGATATACACGCGGGGGCCGTAAACAGCAAGGAGTCCGGCGACGGCAGCAGCTCACTGAGGAGGTATGCCATGGAAGTATGACCGACGTTTAATTAAGATAAGTCGGTTAAAAATGGATGAGAACTTAATACGCTGTTCAAGATAATCATCGTGTCACATGAAATGGATGACAGTTATTGGCTACCTTATGCGAAGTTACGGTACGTTGCAAAATGAATGGTGTGAAAATGCGGTTTGCATGCCAAGAAAGTGTAGCTCTTGTCAAGACATTTTACGGCCAATTGGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24322	Semaphorin-1A OS=Drosophila melanogaster OX=7227 GN=Sema1a PE=1 SV=3
Q26972	Semaphorin-1A OS=Tribolium confusum OX=7071 GN=SEMA-1A PE=2 SV=1
Q60519	Semaphorin-5B OS=Mus musculus OX=10090 GN=Sema5b PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002518 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan
PF01390 all species →	SEA	SEA domain	Family	Interproscan
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027231 all species →	Family	Semaphorin	Interproscan
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036 all species →	SEMAPHORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001755 all species →	Biological Process	neural crest cell migration	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030215 all species →	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335 all species →	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499 all species →	Molecular Function	chemorepellent activity	Interproscan
GO:0048843 all species →	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919 all species →	Biological Process	negative chemotaxis	Interproscan
GO:0071526 all species →	Biological Process	semaphorin-plexin signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_040694-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.