Detailed information of FUN_040710-T1 in Acropora pulchra

Genomic Location: ptg000031l:12259052...12265150
NR annotation: XP_029211520.2, paired box protein Pax-3-B-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P23760Paired box protein Pax-3 OS=Homo sapiens OX=9606 GN=PAX3 PE=1 SV=2
P24610Paired box protein Pax-3 OS=Mus musculus OX=10090 GN=Pax3 PE=1 SV=2
Q0IH87Paired box protein Pax-3-B OS=Xenopus laevis OX=8355 GN=pax3-b PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000410 (this species only)
Transcription factor familyHomeobox · all TF in this species
Transcription factor familyPAX · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan
PF00292
all species →		PAX'Paired box' domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR000047
all species →		Conserved_siteHelix-turn-helix motifInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001523
all species →		DomainPaired domainInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR043565
all species →		FamilyPAX familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45636
all species →		PAIRED BOX PROTEIN PAX-6-RELATED-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_040710-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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